Marching tet iso surface algorithm with optional filtering to keep only points originating from mesh edges. More...

Inheritance diagram for isoSurfaceTopo:

Collaboration diagram for isoSurfaceTopo:

Public Member Functions
	TypeName ("isoSurfaceTopo")

	isoSurfaceTopo (const polyMesh &mesh, const scalarField &cellValues, const scalarField &pointValues, const scalar iso, const isoSurfaceParams &params=isoSurfaceParams(), const bitSet &ignoreCells=bitSet())

virtual	~isoSurfaceTopo ()=default

const edgeList &	pointToVerts () const noexcept

virtual tmp< Field< scalar > >	interpolate (const GeometricField< scalar, fvPatchField, volMesh > &cellValues, const Field< scalar > &pointValues) const
	interpolate scalar cellValues, pointValues on iso-surface More...

virtual tmp< Field< vector > >	interpolate (const GeometricField< vector, fvPatchField, volMesh > &cellValues, const Field< vector > &pointValues) const
	interpolate vector cellValues, pointValues on iso-surface More...

virtual tmp< Field< sphericalTensor > >	interpolate (const GeometricField< sphericalTensor, fvPatchField, volMesh > &cellValues, const Field< sphericalTensor > &pointValues) const
	interpolate sphericalTensor cellValues, pointValues on iso-surface More...

virtual tmp< Field< symmTensor > >	interpolate (const GeometricField< symmTensor, fvPatchField, volMesh > &cellValues, const Field< symmTensor > &pointValues) const
	interpolate symmTensor cellValues, pointValues on iso-surface More...

virtual tmp< Field< tensor > >	interpolate (const GeometricField< tensor, fvPatchField, volMesh > &cellValues, const Field< tensor > &pointValues) const
	interpolate tensor cellValues, pointValues on iso-surface More...

template<class Type >
Foam::tmp< Foam::Field< Type > >	interpolateTemplate (const Field< Type > &cellData, const Field< Type > &pointData) const

Public Member Functions inherited from isoSurfaceBase
	isoSurfaceBase (const polyMesh &mesh, const scalarField &cellValues, const scalarField &pointValues, const scalar iso, const isoSurfaceParams &params=isoSurfaceParams())

const polyMesh &	mesh () const noexcept

const scalarField &	cellValues () const noexcept

const scalarField &	pointValues () const noexcept

scalar	isoValue () const noexcept

const labelList &	meshCells () const noexcept

labelList &	meshCells () noexcept

label	blockCells (UList< cutType > &cuts, const bitSet &ignoreCells) const

label	blockCells (UList< cutType > &cuts, const boundBox &bb, const volumeType::type volType) const

void	ignoreCyclics ()

label	calcCellCuts (List< cutType > &cuts) const

cutType	getFaceCutType (const label facei) const

cutType	getCellCutType (const label celli) const

Public Member Functions inherited from MeshedSurface
	ClassName ("MeshedSurface")

	MeshedSurface ()

	MeshedSurface (const MeshedSurface &surf)

	MeshedSurface (const UnsortedMeshedSurface< Face > &surf)

	MeshedSurface (MeshedSurface &&surf)

	MeshedSurface (UnsortedMeshedSurface< Face > &&surf)

	MeshedSurface (const pointField &pointLst, const UList< Face > &faceLst, const UList< surfZone > &zoneLst)

	MeshedSurface (pointField &&pointLst, List< Face > &&faceLst, const UList< surfZone > &zoneLst)

	MeshedSurface (const pointField &pointLst, const UList< Face > &faceLst, const labelUList &zoneSizes=labelUList(), const UList< word > &zoneNames=UList< word >())

	MeshedSurface (pointField &&pointLst, List< Face > &&faceLst, const labelUList &zoneSizes=labelUList(), const UList< word > &zoneNames=UList< word >())

	MeshedSurface (const polyBoundaryMesh &bMesh, const bool globalPoints=false)

	MeshedSurface (const surfMesh &mesh)

	MeshedSurface (const fileName &name)

	MeshedSurface (const fileName &name, const word &fileType)

	MeshedSurface (Istream &is)

	MeshedSurface (const Time &runTime)

	MeshedSurface (const Time &runTime, const word &surfName)

	MeshedSurface (const IOobject &io, const dictionary &dict, const bool isGlobal=true)

	declareRunTimeSelectionTable (autoPtr, MeshedSurface, fileExtension,(const fileName &name),(name))

virtual	~MeshedSurface ()

	declareMemberFunctionSelectionTable (void, UnsortedMeshedSurface, write, fileExtension,(const fileName &name, const MeshedSurface< Face > &surf, IOstreamOption streamOpt, const dictionary &options),(name, surf, streamOpt, options))

label	size () const

const List< Face > &	surfFaces () const

const labelList &	faceIds () const

const surfZoneList &	surfZones () const

const vectorField &	Sf () const

const scalarField &	magSf () const

const vectorField &	Cf () const

virtual void	clear ()

virtual void	addZones (const UList< surfZone > &, const bool cullEmpty=false)

virtual void	addZones (const labelUList &sizes, const UList< word > &names, const bool cullEmpty=false)

virtual void	addZones (const labelUList &sizes, const bool cullEmpty=false)

bool	addZonesToFaces ()

virtual void	removeZones ()

virtual void	movePoints (const pointField &newPoints)

virtual void	scalePoints (const scalar scaleFactor)

virtual void	cleanup (const bool verbose)

virtual void	compactPoints (labelList &pointMap=const_cast< labelList & >(labelList::null()))

virtual bool	stitchFaces (const scalar tol=SMALL, const bool verbose=false)

virtual bool	checkFaces (const bool verbose=false)

virtual label	nTriangles () const

virtual label	nTriangles (labelList &faceMap) const

virtual label	triangulate ()

virtual label	triangulate (labelList &faceMap)

template<class BoolListType >
void	subsetMeshMap (const BoolListType &include, labelList &pointMap, labelList &faceMap) const

MeshedSurface	subsetMesh (const UList< bool > &include, labelList &pointMap, labelList &faceMap) const

MeshedSurface	subsetMesh (const bitSet &include, labelList &pointMap, labelList &faceMap) const

MeshedSurface	subsetMesh (const UList< bool > &include) const

MeshedSurface	subsetMesh (const bitSet &include) const

MeshedSurface	subsetMesh (const wordRes &includeNames, const wordRes &excludeNames=wordRes()) const

void	swap (MeshedSurface< Face > &surf)

void	transfer (pointField &pointLst, List< Face > &faceLst)

void	transfer (MeshedSurface< Face > &surf)

void	transfer (UnsortedMeshedSurface< Face > &surf)

autoPtr< MeshedSurface< Face > >	releaseGeom ()

void	swapFaces (List< Face > &faces)

void	swapPoints (pointField &points)

bool	read (const fileName &name, const word &fileType)

virtual bool	read (const fileName &name)

void	writeStats (Ostream &os) const

virtual void	write (const fileName &name, IOstreamOption streamOpt=IOstreamOption(), const dictionary &options=dictionary::null) const

virtual void	write (const fileName &name, const word &fileType, IOstreamOption streamOpt=IOstreamOption(), const dictionary &options=dictionary::null) const

void	write (const Time &runTime, const word &surfName=word::null) const

void	operator= (const MeshedSurface< Face > &surf)

void	operator= (MeshedSurface< Face > &&surf)

	operator MeshedSurfaceProxy< Face > () const

template<class Face >
	MeshedSurface ()

template<class Face >
	MeshedSurface (const MeshedSurface< Face > &surf)

template<class Face >
	MeshedSurface (const UnsortedMeshedSurface< Face > &surf)

template<class Face >
	MeshedSurface (MeshedSurface< Face > &&surf)

template<class Face >
	MeshedSurface (UnsortedMeshedSurface< Face > &&surf)

template<class Face >
	MeshedSurface (const pointField &pointLst, const UList< Face > &faceLst, const UList< surfZone > &zoneLst)

template<class Face >
	MeshedSurface (pointField &&pointLst, List< Face > &&faceLst, const UList< surfZone > &zoneLst)

template<class Face >
	MeshedSurface (const pointField &pointLst, const UList< Face > &faceLst, const labelUList &zoneSizes, const UList< word > &zoneNames)

template<class Face >
	MeshedSurface (pointField &&pointLst, List< Face > &&faceLst, const labelUList &zoneSizes, const UList< word > &zoneNames)

template<class Face >
	MeshedSurface (const surfMesh &mesh)

template<class Face >
	MeshedSurface (const polyBoundaryMesh &bMesh, const bool useGlobalPoints)

template<class Face >
	MeshedSurface (const fileName &name, const word &fileType)

template<class Face >
	MeshedSurface (const fileName &name)

template<class Face >
	MeshedSurface (Istream &is)

template<class Face >
	MeshedSurface (const Time &runTime)

template<class Face >
	MeshedSurface (const Time &runTime, const word &surfName)

template<class Face >
	MeshedSurface (const IOobject &io, const dictionary &dict, const bool isGlobal)

bool	addZonesToFaces ()

bool	addZonesToFaces ()

Public Member Functions inherited from isoSurfaceParams
	isoSurfaceParams (const algorithmType algo=algorithmType::ALGO_DEFAULT, const filterType filter=filterType::DIAGCELL) noexcept

	isoSurfaceParams (const dictionary &dict, const isoSurfaceParams &params=isoSurfaceParams())

	isoSurfaceParams (const dictionary &dict, const algorithmType algo, const filterType filter=filterType::DIAGCELL)

algorithmType	algorithm () const noexcept

void	algorithm (algorithmType algo) noexcept

filterType	filter () const noexcept

void	filter (filterType fltr) noexcept

bool	snap () const noexcept

void	snap (bool on) noexcept

scalar	mergeTol () const noexcept

void	mergeTol (const scalar relTol) noexcept

const boundBox &	getClipBounds () const noexcept

boundBox &	getClipBounds () noexcept

void	setClipBounds (const boundBox &bb)

void	print (Ostream &os) const

Protected Member Functions
void	inplaceSubsetMesh (const bitSet &include)

template<class Type >
tmp< Field< Type > >	interpolateTemplate (const Field< Type > &cellData, const Field< Type > &pointData) const

Protected Member Functions inherited from isoSurfaceBase
template<class Type >
tmp< Field< Type > >	interpolateTemplate (const GeometricField< Type, fvPatchField, volMesh > &cellValues, const Field< Type > &pointValues) const

	isoSurfaceBase (const isoSurfaceBase &)=delete

void	operator= (const isoSurfaceBase &)=delete

Protected Member Functions inherited from MeshedSurface
void	transcribe (MeshedSurface< face > &surf)

void	checkZones (const bool verbose=true)

pointField &	storedPoints ()

List< Face > &	storedFaces ()

labelList &	storedFaceIds ()

surfZoneList &	storedZones ()

void	sortFacesAndStore (DynamicList< Face > &unsortedFaces, DynamicList< label > &zoneIds, DynamicList< label > &elemIds, bool sorted)

virtual void	remapFaces (const labelUList &faceMapNewToOld)

void	transcribe (MeshedSurface< face > &surf)

void	transcribe (MeshedSurface< face > &surf)

void	transcribe (MeshedSurface< face > &surf)

Additional Inherited Members
Public Types inherited from isoSurfaceBase
enum	cutType : uint8_t { NOTCUT = 0, CUT = 0x1, TETCUT = 0x2, SPHERE = 0x4, ANYCUT = 0xF, UNVISITED = 0x10, BLOCKED = 0x20, SPECIAL = 0xF0 }

enum	algorithmType

enum	filterType

Public Types inherited from MeshedSurface
typedef Face	face_type

typedef point	point_type

Public Types inherited from isoSurfaceParams
enum	algorithmType : uint8_t { ALGO_DEFAULT = 0, ALGO_TOPO, ALGO_CELL, ALGO_POINT }

enum	filterType : uint8_t { NONE = 0, CELL, DIAGCELL, NONMANIFOLD, PARTIAL = CELL, FULL = DIAGCELL, CLEAN = NONMANIFOLD }

Static Public Member Functions inherited from isoSurfaceBase
static autoPtr< isoSurfaceBase >	New (const isoSurfaceParams &params, const volScalarField &cellValues, const scalarField &pointValues, const scalar iso, const bitSet &ignoreCells=bitSet())

static void	resetCuts (UList< cutType > &cuts)

Static Public Member Functions inherited from MeshedSurface
static wordHashSet	readTypes ()

static wordHashSet	writeTypes ()

static bool	canReadType (const word &fileType, bool verbose=false)

static bool	canWriteType (const word &fileType, bool verbose=false)

static bool	canRead (const fileName &name, bool verbose=false)

static autoPtr< MeshedSurface >	New (const fileName &name, const word &fileType, bool mandatory=true)

static autoPtr< MeshedSurface >	New (const fileName &name)

static void	write (const fileName &name, const MeshedSurface< Face > &surf, IOstreamOption streamOpt=IOstreamOption(), const dictionary &options=dictionary::null)

static void	write (const fileName &name, const word &fileType, const MeshedSurface< Face > &surf, IOstreamOption streamOpt=IOstreamOption(), const dictionary &options=dictionary::null)

Static Public Member Functions inherited from isoSurfaceParams
static algorithmType	getAlgorithmType (const dictionary &dict, const algorithmType deflt)

static filterType	getFilterType (const dictionary &dict, const filterType deflt)

Static Public Attributes inherited from isoSurfaceParams
static const Enum< algorithmType >	algorithmNames

static const Enum< filterType >	filterNames

Protected Types inherited from isoSurfaceBase
typedef meshedSurface	Mesh

typedef cutType	cellCutType

Static Protected Member Functions inherited from isoSurfaceBase
static label	countCutType (const UList< cutType > &cuts, const uint8_t maskValue)

Protected Attributes inherited from isoSurfaceBase
const polyMesh &	mesh_

const scalarField &	cVals_

const scalarField &	pVals_

const scalar	iso_

bitSet	ignoreBoundaryFaces_

labelList	meshCells_

Detailed Description

Marching tet iso surface algorithm with optional filtering to keep only points originating from mesh edges.

Source files

Definition at line 55 of file isoSurfaceTopo.H.

Constructor & Destructor Documentation

◆ isoSurfaceTopo()

isoSurfaceTopo	(	const polyMesh &	mesh,
		const scalarField &	cellValues,
		const scalarField &	pointValues,
		const scalar	iso,
		const isoSurfaceParams &	params = `isoSurfaceParams()`,
		const bitSet &	ignoreCells = `bitSet()`
	)

Definition at line 902 of file isoSurfaceTopo.C.

References vtuCells::addPointCellLabels(), polyMeshTetDecomposition::adjustTetBasePtIs(), BLOCKED, polyMesh::bounds(), List::clear(), DynamicList::clearStorage(), bitSet::count(), Foam::expressions::patchExpr::debug, Foam::dimless, Foam::constant::electromagnetic::e, PrimitivePatch< FaceList, PointField >::edgeFaces(), PrimitivePatch< FaceList, PointField >::edges(), Foam::endl(), f(), isoSurfaceParams::filter(), isoSurfaceParams::filterNames, forAll, isoSurfaceParams::getClipBounds(), Foam::getMeshPointRef(), Foam::identity(), Foam::Info, Foam::inplaceSubset(), HashSet::insert(), boundBox::mag(), mesh, PrimitivePatch< FaceList, PointField >::meshPoints(), Foam::minMax(), Foam::constant::atomic::mp, primitiveMesh::nCells(), vtuSizing::nFieldPoints(), primitiveMesh::nInternalFaces(), Foam::nl, IOobject::NO_READ, IOobject::NO_WRITE, volumeType::OUTSIDE, points, Foam::Pout, GeometricField::primitiveFieldRef(), word::printf(), vtuCells::reset(), vtuCells::resetShapes(), List::resize(), PackedList::resize(), Foam::returnReduce(), s, edge::second(), bitSet::set(), vtuSizing::setNumPoints(), MeshedSurface::size(), bitSet::test(), writer< Type >::write(), writer(), and Foam::Zero.

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◆ ~isoSurfaceTopo()

virtual ~isoSurfaceTopo ( )

virtualdefault

Member Function Documentation

◆ inplaceSubsetMesh()

void inplaceSubsetMesh ( const bitSet & include )

protected

Definition at line 1611 of file isoSurfaceTopo.C.

References Foam::faceMap().

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◆ interpolateTemplate() [1/2]

tmp<Field<Type> > interpolateTemplate	(	const Field< Type > &	cellData,
		const Field< Type > &	pointData
	)		const

protected

◆ TypeName()

TypeName ( "isoSurfaceTopo" )

◆ pointToVerts()

const edgeList& pointToVerts ( ) const

inlinenoexcept

Definition at line 246 of file isoSurfaceTopo.H.

◆ interpolate() [1/5]

virtual tmp<Field< scalar > > interpolate	(	const GeometricField< scalar, fvPatchField, volMesh > &	cellValues,
		const Field< scalar > &	pointValues
	)		const

virtual

interpolate scalar cellValues, pointValues on iso-surface

Reimplemented from isoSurfaceBase.

◆ interpolate() [2/5]

Foam::tmp< Foam::Field< Foam::vector > > interpolate	(	const GeometricField< vector, fvPatchField, volMesh > &	cellValues,
		const Field< vector > &	pointValues
	)		const

virtual

interpolate vector cellValues, pointValues on iso-surface

Reimplemented from isoSurfaceBase.

Definition at line 39 of file isoSurfaceTopo.C.

◆ interpolate() [3/5]

Foam::tmp< Foam::Field< Foam::sphericalTensor > > interpolate	(	const GeometricField< sphericalTensor, fvPatchField, volMesh > &	cellValues,
		const Field< sphericalTensor > &	pointValues
	)		const

virtual

interpolate sphericalTensor cellValues, pointValues on iso-surface

Reimplemented from isoSurfaceBase.

Definition at line 39 of file isoSurfaceTopo.C.

◆ interpolate() [4/5]

Foam::tmp< Foam::Field< Foam::symmTensor > > interpolate	(	const GeometricField< symmTensor, fvPatchField, volMesh > &	cellValues,
		const Field< symmTensor > &	pointValues
	)		const

virtual

interpolate symmTensor cellValues, pointValues on iso-surface

Reimplemented from isoSurfaceBase.

Definition at line 39 of file isoSurfaceTopo.C.

◆ interpolate() [5/5]

Foam::tmp< Foam::Field< Foam::tensor > > interpolate	(	const GeometricField< tensor, fvPatchField, volMesh > &	cellValues,
		const Field< tensor > &	pointValues
	)		const

virtual

interpolate tensor cellValues, pointValues on iso-surface

Reimplemented from isoSurfaceBase.

Definition at line 39 of file isoSurfaceTopo.C.

◆ interpolateTemplate() [2/2]

Foam::tmp<Foam::Field<Type> > interpolateTemplate	(	const Field< Type > &	cellData,
		const Field< Type > &	pointData
	)		const

Definition at line 27 of file isoSurfaceTopoTemplates.C.

References fld, forAll, Foam::mag(), Foam::New(), s, and edge::second().

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The documentation for this class was generated from the following files:

src/sampling/surface/isoSurface/isoSurfaceTopo.H
src/sampling/surface/isoSurface/isoSurfaceTopo.C
src/sampling/surface/isoSurface/isoSurfaceTopoTemplates.C

Public Member Functions

Protected Member Functions

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ isoSurfaceTopo()

◆ ~isoSurfaceTopo()

Member Function Documentation

◆ inplaceSubsetMesh()

◆ interpolateTemplate() [1/2]

◆ TypeName()

◆ pointToVerts()

◆ interpolate() [1/5]

◆ interpolate() [2/5]

◆ interpolate() [3/5]

◆ interpolate() [4/5]

◆ interpolate() [5/5]

◆ interpolateTemplate() [2/2]