canopySource.C

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/*---------------------------------------------------------------------------*\
  =========                 |
  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
   \\    /   O peration     |
    \\  /    A nd           | Copyright (C) 2015-2016 OpenFOAM Foundation
     \\/     M anipulation  |
-------------------------------------------------------------------------------
License
    This file is part of OpenFOAM.
 
    OpenFOAM is free software: you can redistribute it and/or modify it
    under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.
 
    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
    for more details.
 
    You should have received a copy of the GNU General Public License
    along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
 
\*---------------------------------------------------------------------------*/
 
#include "canopySource.H"
#include "fvMesh.H"
#include "fvMatrices.H"
#include "fvCFD.H"
#include "addToRunTimeSelectionTable.H"
#include "groundDist.H"
#include <iostream>
// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
 
namespace Foam
{
namespace fv
{
    defineTypeNameAndDebug(canopySource, 0);
    addToRunTimeSelectionTable
    (
        option,
        canopySource,
        dictionary
    );
 
}
}
 
// * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
 
Foam::fv::canopySource::canopySource
(
    const word& name,
    const word& modelType,
    const dictionary& dict,
    const fvMesh& mesh
)
:
  option(name, modelType, dict, mesh)
{
 
  if (active()) {
    
    fieldNames_.setSize(3);
    fieldNames_[0] = word("U");
    fieldNames_[1] = word("k");
    fieldNames_[2] = word("epsilon");
    applied_.setSize(fieldNames_.size(), false);
 
    read(dict);
  }
}
 
 
 
// * * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * //
 
 
void Foam::fv::canopySource::addSup
(
    fvMatrix<vector>& eqn,
    const label fieldi
)
{
  
Info <<"eqn.psi() name is " <<  eqn.psi().name() << endl;
 
    const volVectorField& U = eqn.psi();
    const volScalarField& canopy = canopy_;
 
Info << "U volVectorField is " << nl << U << endl;
Info << "canopy volVectorField is " << nl << canopy << endl;
 
 
    fvMatrix<vector> S_canopy
    (
       fvm::Sp(canopy * mag(U), U)
     );
    
    eqn -=  S_canopy;
  
}
 
 
void Foam::fv::canopySource::addSup
 (
     const volScalarField& rho,
     fvMatrix<vector>& eqn,
     const label fieldi
 )
 {
 
  if (eqn.psi().name() == word("U")) {
    
    const volVectorField& U = eqn.psi();
    const volScalarField& canopy = canopy_;
 
    fvMatrix<vector> S_canopy
    (
       fvm::Sp(rho*canopy * mag(U), U)
    );
 
    eqn -=  S_canopy;
  }
 
  
 }
 
 
void Foam::fv::canopySource::checkData() const
{
 
  if(landuseTable_.size() == 0)
    FatalErrorInFunction
      << "Missing landuse classes for canopySource in constant/fvOptions"
      << exit(FatalError);
 
  if(sourcePatches_.size() == 0 && !readLanduseFromRaster_)
    FatalErrorInFunction
      << "No source patches given for landuse data"
      << exit(FatalError);
}
 
Raster Foam::fv::canopySource::readRaster(fileName rasterPath){
  
  vector translationVector(0, 0, 0);
  translationVector = coeffs_.lookupOrDefault("translateRaster", translationVector, false, false);
  // translateRasterX_ = coeffs_.lookupOrDefault("translateRaster", vector0, false, false);
  // translateRasterY_ = coeffs_.lookupOrDefault("translateRasterY", 0, false, false);
 
  Raster raster;
 
  // read raster
  if(!raster.read(rasterPath.c_str()))
    FatalErrorInFunction
      << "Cannot read raster file: " << rasterPath
      << exit(FatalError);
 
  raster.translate(double(translationVector.x()), double(translationVector.y()));
  
  Info << "    Reading raster: " << rasterPath << endl
       << "    (x1, y1, x2, y2): ("
       << raster.xll << ", " << raster.yll << ", " << raster.xur << ", " << raster.yur
       << ") (nrows, ncols): (" << raster.nrows << " ," << raster.ncols
       << ") cellsize: " << raster.cellsize << endl << endl;
  return raster;
}
 
void Foam::fv::canopySource::readLanduseClasses()
{
  // get landuse definitions
  dictionary landuseDict = coeffs_.subDict("landuse");    
  wordList landuseNames(landuseDict.toc());
  
  Info << endl
       << "    ---------------------Landuse categories--------------------" << endl;
  Info << "    name\tcode\tCd\tLAI\tz0\theight\tLADmax" << endl;
  forAll(landuseNames, i) {
      word name = landuseNames[i];
      //dictionary luDict = landuseDict.subDict(name);
      landuseClass lu(landuseDict, name);
      landuseTable_.insert(lu.code(), lu);
      Info << "    " << lu.name() << "\t"<< lu.code() << "\t" << lu.Cd()
           << "\t" << lu.LAI() << "\t" << lu.z0() << "\t" << lu.height()
           << "\t" << lu.LADmax() << endl;
  }
  Info << endl;
}
 
 
bool Foam::fv::canopySource::read(const dictionary& dict)
{
    if (!option::read(dict))
      return false;
 
    // if option is not active, it will not be read
    if (! active())
      return true;
 
    // for which patches to set landuse
    coeffs_.lookup("sourcePatches") >> sourcePatches_;
  
    // read from disk if present
    readFromDisk_ = coeffs_.lookupOrDefault("readFromDisk", false, false, false);
 
    readLanduseFromRaster_ = coeffs_.lookupOrDefault("readLanduseFromRaster", false, false, false);
    readCanopyHeightFromRaster_ = coeffs_.lookupOrDefault("readCanopyHeightFromRaster", false, false, false);
    writeFields_ = coeffs_.lookupOrDefault("writeFields", false, false, false);
    
    readLanduseClasses();
 
    if (readLanduseFromRaster_ ) {
      fileName landuseRasterFileName;
      coeffs_.lookup("landuseRasterFileName") >>  landuseRasterFileName;
      landuseRaster_ = readRaster(landuseRasterFileName);
    }
 
    if (readCanopyHeightFromRaster_ ) {
      fileName canopyHeightRasterFileName;
      coeffs_.lookup("canopyHeightRasterFileName") >>  canopyHeightRasterFileName;
      canopyHeightRaster_ = readRaster(canopyHeightRasterFileName);
    }
 
    // read landuse codes for each patch
    if (!readLanduseFromRaster_) {
      labelList patchLanduseList;
      coeffs_.lookup("patchLanduse") >> patchLanduseList;
      if((patchLanduseList.size() != sourcePatches_.size()))
        FatalErrorInFunction
          << "Wrong number of rows in patchLanduse,"
          <<"should be equal to number of source patches "
          << exit(FatalError);
          
      forAll(sourcePatches_, i) {
        label patchID = mesh_.boundaryMesh().findPatchID(sourcePatches_[i]);
        if (patchID == -1)
          FatalErrorInFunction
            << "Cannot find landuse source patch: "
            << sourcePatches_[i]
            << exit(FatalError);
 
        label patchLanduseCode = patchLanduseList[i];
        landuseClass lu = landuseTable_[patchLanduseCode];        
        patchLanduseTable_.insert(patchID, landuseTable_[lu.code()]);
      }
    }
    checkData();
    calculateCanopy();
    return true;
}
 
void Foam::fv::canopySource::setPatchLanduse(
                label patch,
                volScalarField &landuse,
                volScalarField &LAD,
                volScalarField &z0,
                volScalarField &nut,
                volScalarField &d)
{
 
  const fvMesh & mesh=landuse.mesh();
  const polyPatch& pp = mesh.boundaryMesh()[patch];
 
 
    Foam::nutkAtmRoughWallFunctionFvPatchScalarField& wallNut =
    refCast<Foam::nutkAtmRoughWallFunctionFvPatchScalarField>(nut.boundaryField()[patch]);
 
  scalarField& nutZ0 = wallNut.z0();
   
  Foam::fvPatchScalarField& patchLanduse = landuse.boundaryField()[patch];
  Foam::fvPatchScalarField& patchZ0 = z0.boundaryField()[patch];
  forAll(patchLanduse,facei)
    {
      
      landuseClass lu;
      if (readLanduseFromRaster_) {
        scalar x=pp.faceCentres()[facei].x();
        scalar y=pp.faceCentres()[facei].y();
        lu = landuseTable_[label(landuseRaster_.getValue(double(x),double(y)))];
      }
      else {
        lu = patchLanduseTable_[patch];
      }
 
      if (!landuse_from_disk_)
        patchLanduse[facei] = scalar(lu.code());
 
      if (!z0_from_disk_)
        patchZ0[facei] = lu.z0();
 
      // z0 for actual calculations is stored as scalarField 
      // within boundary condition dictionary of nut
      nutZ0[facei] = patchZ0[facei];      
    }
 
  forAll(d.internalField(), celli)
    {
 
      // get landuse class
      landuseClass lu;
 
      scalar x = mesh.C()[celli].x();
      scalar y = mesh.C()[celli].y();
      scalar height = 0;
 
      if (readLanduseFromRaster_)
        lu = landuseTable_[label(landuseRaster_.getValue(double(x),double(y)))];
      else
        lu = patchLanduseTable_[patch];
 
//Info << "after read landuse, landuseClass lu is " <<  lu << endl; 
 
 
      if (readCanopyHeightFromRaster_ 
          && lu.LADmax() > 0 
          && canopyHeightRaster_.inside(double(x), double(y))) {
        height = canopyHeightRaster_.getValue(double(x), double(y));
      }
      else
        height = lu.height();
 
Info << "after read canopy height , the height of  lu is " << endl << height << endl; 
      // set landuse up to canopy height and LAD according to LADProfile
      scalar patchDistance = d.internalField()[celli];
      if (patchDistance < 0)
        cout<<"patchDistance: " << patchDistance<<'\n';
      if (patchDistance < height && height > 0)
    {
      landuse.internalField()[celli] = scalar(lu.code());
      LAD.internalField()[celli] = lu.LAD(patchDistance, height);
    }
  
     Info << "landuse.internalField is "<< endl <<  landuse.internalField()[celli] << endl ;
     Info << "LAD.internalField is "<< endl <<   LAD.internalField()[celli]<< endl;
 
  }
}
 
 
void Foam::fv::canopySource::calculatePatchDistance(label patch, volScalarField& d)
{
 
  labelHashSet sourcePatchIDs(1);  
  sourcePatchIDs.insert(patch);
  // calculate distance to sourcePatches
  d = (const volScalarField&) groundDist(mesh_,sourcePatchIDs).y();
  Info << "calculatePatchDistance  volScalarField d is " << nl << d << endl;
  return;
}
 
void Foam::fv::canopySource::calculateCanopy()
{
 
 
 // volScalarField& landuse;
 //  volScalarField& LAD;
 //  volScalarField&  z0;
  
  autoPtr<volScalarField> landuse;
  autoPtr<volScalarField> LAD;
  autoPtr<volScalarField> z0;
 
  IOobject landuseHeader
  (
      "landuse",
      mesh_.time().timeName(),
      mesh_,
      IOobject::NO_READ,
      IOobject::NO_WRITE,
      false
  );
 
  if (readFromDisk_) {
    landuse_from_disk_ = true;
    Info << "    Reading existing landuse field" << endl;
    landuse.reset
    (
        new volScalarField
        (
            IOobject
            (
                "landuse",
                mesh_.time().timeName(),
                mesh_,
                IOobject::MUST_READ,
                IOobject::NO_WRITE
            ),
            mesh_
        )
     );
  }
  else {
    landuse_from_disk_ = false;
    landuse.reset
    (
        new volScalarField
        (
             IOobject
             (
                 "landuse",
                 mesh_.time().timeName(),
                 mesh_,
                 IOobject::NO_READ,
                 IOobject::NO_WRITE
             ),
             mesh_,
             dimensionedScalar("landuse", dimensionSet(0,0,0,0,0,0,0), -1),
             calculatedFvPatchScalarField::typeName
        )
    );
  }
 
  IOobject z0Header
  (
      "z0",
      mesh_.time().timeName(),
      mesh_,
      IOobject::NO_READ,
      IOobject::NO_WRITE,
      false
  );
 
  if (readFromDisk_) {
    z0_from_disk_ = true;
    Info << "    Reading existing z0 field" << endl;
    z0.reset
    (
        new volScalarField
        (
            IOobject
            (
                "z0",
                mesh_.time().timeName(),
                mesh_,
                IOobject::MUST_READ,
                IOobject::NO_WRITE
            ),
            mesh_
        )
     );
  }
  else {
    z0_from_disk_ = false;
    z0.reset
    (
        new volScalarField
        (
             IOobject
             (
                 "z0",
                 mesh_.time().timeName(),
                 mesh_,
                 IOobject::NO_READ,
                 IOobject::NO_WRITE
             ),
             mesh_,
             dimensionedScalar("z0", dimLength, -1),
             calculatedFvPatchScalarField::typeName
        )
    );
  }
 
  IOobject LADHeader
  (
      "LAD",
      mesh_.time().timeName(),
      mesh_,
      IOobject::NO_READ,
      IOobject::NO_WRITE,
      false
  );
 
  if (readFromDisk_) {
    LAD_from_disk_ = true;
    Info << "    Reading existing LAD field" << endl;    
    LAD.reset
    (
       new volScalarField
       (
           IOobject
           (
               "LAD",
               mesh_.time().timeName(),
               mesh_,
               IOobject::MUST_READ,
               IOobject::AUTO_WRITE
           ),
           mesh_
       )
    );
  }
  else 
  {
    LAD_from_disk_ = false;
    LAD.reset
    (
        new volScalarField
        (
           IOobject
           (
               "LAD",
               mesh_.time().timeName(),
               mesh_,
               IOobject::NO_READ,
               IOobject::AUTO_WRITE
           ),
           mesh_,
           dimensionedScalar("lad", dimensionSet(0,-1,0,0,0,0,0), 0),
           calculatedFvPatchScalarField::typeName
        )
    );
  }
 
  // patch distance
  volScalarField d
  (
     IOobject
     (
          "d",
          mesh_.time().timeName(),
          mesh_,
          IOobject::NO_READ,
          IOobject::NO_WRITE
     ),
     mesh_,
     dimensionedScalar("d",dimLength, SMALL),
     calculatedFvPatchScalarField::typeName
  );
  
  canopy_.reset
  (
     new volScalarField(
         IOobject
         (
            "canopy",
            mesh_.time().timeName(),
            mesh_,
            IOobject::NO_READ,
            IOobject::NO_WRITE
         ),
         mesh_,
         dimensionedScalar("canopy",dimensionSet(0,-1,0,0,0,0,0),0)
     )
  );
 
  volScalarField& nut = mesh_.lookupObjectRef<volScalarField>("nut");
 scalarField& canopy = canopy_->internalField();
 
 // // set landuse, LAD and z0
//  Info<<"\n    Setting landuse for patch: " << endl;
  forAll(sourcePatches_, sp) {
    word patchName = sourcePatches_[sp];
//    Info<<"    -- " << patchName << endl; 
    label patchID = mesh_.boundaryMesh().findPatchID(patchName);
    
    if (patchID == -1)
      FatalIOErrorIn(
         "void Foam::fv::canopySource::setPatchLanduse("
         "landuseClass,"
         "label,"
         "volScalarField&,"
         "volScalarField&,"
         "volScalarField&)",
         coeffs_
      ) << "Cannot find patch " << patchName << exit(FatalIOError);
 
 
      calculatePatchDistance(patchID, d);    
      //setPatchLanduse(patchID, landuse(), LAD(), z0(), nut, d);
      setPatchLanduse(patchID, landuse(), LAD(), z0(), nut, d);
  }
 
  // calculate canopy (Cd * LAD)
  forAll(landuse->internalField(),celli) {
    label landuseCode(landuse->internalField()[celli]);
    if (landuseCode != -1) {
      landuseClass lu = landuseTable_[landuseCode];
      canopy[celli] = lu.Cd() * LAD->internalField()[celli];
    }
  }
 
 
  if (writeFields_) {
    landuse->write();
    LAD->write();
    z0->write();
  }     
}
 
 
// ************************************************************************* //