polyMeshAdder.C

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/*---------------------------------------------------------------------------*\
  =========                 |
  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
   \\    /   O peration     |
    \\  /    A nd           | Copyright (C) 2011-2015 OpenFOAM Foundation
     \\/     M anipulation  |
-------------------------------------------------------------------------------
License
    This file is part of OpenFOAM.
 
    OpenFOAM is free software: you can redistribute it and/or modify it
    under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.
 
    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
    for more details.
 
    You should have received a copy of the GNU General Public License
    along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
 
\*---------------------------------------------------------------------------*/
 
#include "polyMeshAdder.H"
#include "mapAddedPolyMesh.H"
#include "IOobject.H"
#include "faceCoupleInfo.H"
#include "processorPolyPatch.H"
#include "SortableList.H"
#include "Time.H"
#include "globalMeshData.H"
#include "mergePoints.H"
#include "polyModifyFace.H"
#include "polyRemovePoint.H"
#include "polyTopoChange.H"
 
// * * * * * * * * * * * * * Private Member Functions  * * * * * * * * * * * //
 
// Get index of patch in new set of patchnames/types
Foam::label Foam::polyMeshAdder::patchIndex
(
    const polyPatch& p,
    DynamicList<word>& allPatchNames,
    DynamicList<word>& allPatchTypes
)
{
    // Find the patch name on the list.  If the patch is already there
    // and patch types match, return index
    const word& pType = p.type();
    const word& pName = p.name();
 
    label patchI = findIndex(allPatchNames, pName);
 
    if (patchI == -1)
    {
        // Patch not found. Append to the list
        allPatchNames.append(pName);
        allPatchTypes.append(pType);
 
        return allPatchNames.size() - 1;
    }
    else if (allPatchTypes[patchI] == pType)
    {
        // Found name and types match
        return patchI;
    }
    else
    {
        // Found the name, but type is different
 
        // Duplicate name is not allowed.  Create a composite name from the
        // patch name and case name
        const word& caseName = p.boundaryMesh().mesh().time().caseName();
 
        allPatchNames.append(pName + "_" + caseName);
        allPatchTypes.append(pType);
 
        Pout<< "label patchIndex(const polyPatch& p) : "
            << "Patch " << p.index() << " named "
            << pName << " in mesh " << caseName
            << " already exists, but patch types"
            << " do not match.\nCreating a composite name as "
            << allPatchNames.last() << endl;
 
        return allPatchNames.size() - 1;
    }
}
 
 
// Get index of zone in new set of zone names
Foam::label Foam::polyMeshAdder::zoneIndex
(
    const word& curName,
    DynamicList<word>& names
)
{
    label zoneI = findIndex(names, curName);
 
    if (zoneI != -1)
    {
        return zoneI;
    }
    else
    {
        // Not found.  Add new name to the list
        names.append(curName);
 
        return names.size() - 1;
    }
}
 
 
void Foam::polyMeshAdder::mergePatchNames
(
    const polyBoundaryMesh& patches0,
    const polyBoundaryMesh& patches1,
 
    DynamicList<word>& allPatchNames,
    DynamicList<word>& allPatchTypes,
 
    labelList& from1ToAllPatches,
    labelList& fromAllTo1Patches
)
{
    // Insert the mesh0 patches and zones
    allPatchNames.append(patches0.names());
    allPatchTypes.append(patches0.types());
 
 
    // Patches
    // ~~~~~~~
    // Patches from 0 are taken over as is; those from 1 get either merged
    // (if they share name and type) or appended.
    // Empty patches are filtered out much much later on.
 
    // Add mesh1 patches and build map both ways.
    from1ToAllPatches.setSize(patches1.size());
 
    forAll(patches1, patchI)
    {
        from1ToAllPatches[patchI] = patchIndex
        (
            patches1[patchI],
            allPatchNames,
            allPatchTypes
        );
    }
    allPatchTypes.shrink();
    allPatchNames.shrink();
 
    // Invert 1 to all patch map
    fromAllTo1Patches.setSize(allPatchNames.size());
    fromAllTo1Patches = -1;
 
    forAll(from1ToAllPatches, i)
    {
        fromAllTo1Patches[from1ToAllPatches[i]] = i;
    }
}
 
 
Foam::labelList Foam::polyMeshAdder::getPatchStarts
(
    const polyBoundaryMesh& patches
)
{
    labelList patchStarts(patches.size());
    forAll(patches, patchI)
    {
        patchStarts[patchI] = patches[patchI].start();
    }
    return patchStarts;
}
 
 
Foam::labelList Foam::polyMeshAdder::getPatchSizes
(
    const polyBoundaryMesh& patches
)
{
    labelList patchSizes(patches.size());
    forAll(patches, patchI)
    {
        patchSizes[patchI] = patches[patchI].size();
    }
    return patchSizes;
}
 
 
Foam::List<Foam::polyPatch*> Foam::polyMeshAdder::combinePatches
(
    const polyMesh& mesh0,
    const polyMesh& mesh1,
    const polyBoundaryMesh& allBoundaryMesh,
    const label nAllPatches,
    const labelList& fromAllTo1Patches,
 
    const label nInternalFaces,
    const labelList& nFaces,
 
    labelList& from0ToAllPatches,
    labelList& from1ToAllPatches
)
{
    const polyBoundaryMesh& patches0 = mesh0.boundaryMesh();
    const polyBoundaryMesh& patches1 = mesh1.boundaryMesh();
 
 
    // Compacted new patch list.
    DynamicList<polyPatch*> allPatches(nAllPatches);
 
 
    // Map from 0 to all patches (since gets compacted)
    from0ToAllPatches.setSize(patches0.size());
    from0ToAllPatches = -1;
 
    label startFaceI = nInternalFaces;
 
    // Copy patches0 with new sizes. First patches always come from
    // mesh0 and will always be present.
    forAll(patches0, patchI)
    {
        // Originates from mesh0. Clone with new size & filter out empty
        // patch.
        label filteredPatchI;
 
        if (nFaces[patchI] == 0 && isA<processorPolyPatch>(patches0[patchI]))
        {
            //Pout<< "Removing zero sized mesh0 patch "
            //    << patches0[patchI].name() << endl;
            filteredPatchI = -1;
        }
        else
        {
            filteredPatchI = allPatches.size();
 
            allPatches.append
            (
                patches0[patchI].clone
                (
                    allBoundaryMesh,
                    filteredPatchI,
                    nFaces[patchI],
                    startFaceI
                ).ptr()
            );
            startFaceI += nFaces[patchI];
        }
 
        // Record new index in allPatches
        from0ToAllPatches[patchI] = filteredPatchI;
 
        // Check if patch was also in mesh1 and update its addressing if so.
        if (fromAllTo1Patches[patchI] != -1)
        {
            from1ToAllPatches[fromAllTo1Patches[patchI]] = filteredPatchI;
        }
    }
 
    // Copy unique patches of mesh1.
    forAll(from1ToAllPatches, patchI)
    {
        label allPatchI = from1ToAllPatches[patchI];
 
        if (allPatchI >= patches0.size())
        {
            // Patch has not been merged with any mesh0 patch.
 
            label filteredPatchI;
 
            if
            (
                nFaces[allPatchI] == 0
             && isA<processorPolyPatch>(patches1[patchI])
            )
            {
                //Pout<< "Removing zero sized mesh1 patch "
                //    << patches1[patchI].name() << endl;
                filteredPatchI = -1;
            }
            else
            {
                filteredPatchI = allPatches.size();
 
                allPatches.append
                (
                    patches1[patchI].clone
                    (
                        allBoundaryMesh,
                        filteredPatchI,
                        nFaces[allPatchI],
                        startFaceI
                    ).ptr()
                );
                startFaceI += nFaces[allPatchI];
            }
 
            from1ToAllPatches[patchI] = filteredPatchI;
        }
    }
 
    allPatches.shrink();
 
    return allPatches;
}
 
 
Foam::labelList Foam::polyMeshAdder::getFaceOrder
(
    const cellList& cells,
    const label nInternalFaces,
    const labelList& owner,
    const labelList& neighbour
)
{
    labelList oldToNew(owner.size(), -1);
 
    // Leave boundary faces in order
    for (label faceI = nInternalFaces; faceI < owner.size(); ++faceI)
    {
        oldToNew[faceI] = faceI;
    }
 
    // First unassigned face
    label newFaceI = 0;
 
    forAll(cells, cellI)
    {
        const labelList& cFaces = cells[cellI];
 
        SortableList<label> nbr(cFaces.size());
 
        forAll(cFaces, i)
        {
            label faceI = cFaces[i];
 
            label nbrCellI = neighbour[faceI];
 
            if (nbrCellI != -1)
            {
                // Internal face. Get cell on other side.
                if (nbrCellI == cellI)
                {
                    nbrCellI = owner[faceI];
                }
 
                if (cellI < nbrCellI)
                {
                    // CellI is master
                    nbr[i] = nbrCellI;
                }
                else
                {
                    // nbrCell is master. Let it handle this face.
                    nbr[i] = -1;
                }
            }
            else
            {
                // External face. Do later.
                nbr[i] = -1;
            }
        }
 
        nbr.sort();
 
        forAll(nbr, i)
        {
            if (nbr[i] != -1)
            {
                oldToNew[cFaces[nbr.indices()[i]]] = newFaceI++;
            }
        }
    }
 
 
    // Check done all faces.
    forAll(oldToNew, faceI)
    {
        if (oldToNew[faceI] == -1)
        {
            FatalErrorInFunction
                << "Did not determine new position"
                << " for face " << faceI
                << abort(FatalError);
        }
    }
 
    return oldToNew;
}
 
 
// Extends face f with split points. cutEdgeToPoints gives for every
// edge the points introduced inbetween the endpoints.
void Foam::polyMeshAdder::insertVertices
(
    const edgeLookup& cutEdgeToPoints,
    const Map<label>& meshToMaster,
    const labelList& masterToCutPoints,
    const face& masterF,
 
    DynamicList<label>& workFace,
    face& allF
)
{
    workFace.clear();
 
    // Check any edge for being cut (check on the cut so takes account
    // for any point merging on the cut)
 
    forAll(masterF, fp)
    {
        label v0 = masterF[fp];
        label v1 = masterF.nextLabel(fp);
 
        // Copy existing face point
        workFace.append(allF[fp]);
 
        // See if any edge between v0,v1
 
        Map<label>::const_iterator v0Fnd = meshToMaster.find(v0);
        if (v0Fnd != meshToMaster.end())
        {
            Map<label>::const_iterator v1Fnd = meshToMaster.find(v1);
            if (v1Fnd != meshToMaster.end())
            {
                // Get edge in cutPoint numbering
                edge cutEdge
                (
                    masterToCutPoints[v0Fnd()],
                    masterToCutPoints[v1Fnd()]
                );
 
                edgeLookup::const_iterator iter = cutEdgeToPoints.find(cutEdge);
 
                if (iter != cutEdgeToPoints.end())
                {
                    const edge& e = iter.key();
                    const labelList& addedPoints = iter();
 
                    // cutPoints first in allPoints so no need for renumbering
                    if (e[0] == cutEdge[0])
                    {
                        forAll(addedPoints, i)
                        {
                            workFace.append(addedPoints[i]);
                        }
                    }
                    else
                    {
                        forAllReverse(addedPoints, i)
                        {
                            workFace.append(addedPoints[i]);
                        }
                    }
                }
            }
        }
    }
 
    if (workFace.size() != allF.size())
    {
        allF.transfer(workFace);
    }
}
 
 
// Adds primitives (cells, faces, points)
// Cells:
//  - all of mesh0
//  - all of mesh1
// Faces:
//  - all uncoupled of mesh0
//  - all coupled faces
//  - all uncoupled of mesh1
// Points:
//  - all coupled
//  - all uncoupled of mesh0
//  - all uncoupled of mesh1
void Foam::polyMeshAdder::mergePrimitives
(
    const polyMesh& mesh0,
    const polyMesh& mesh1,
    const faceCoupleInfo& coupleInfo,
 
    const label nAllPatches,                // number of patches in the new mesh
    const labelList& fromAllTo1Patches,
    const labelList& from1ToAllPatches,
 
    pointField& allPoints,
    labelList& from0ToAllPoints,
    labelList& from1ToAllPoints,
 
    faceList& allFaces,
    labelList& allOwner,
    labelList& allNeighbour,
    label& nInternalFaces,
    labelList& nFacesPerPatch,
    label& nCells,
 
    labelList& from0ToAllFaces,
    labelList& from1ToAllFaces,
    labelList& from1ToAllCells
)
{
    const polyBoundaryMesh& patches0 = mesh0.boundaryMesh();
    const polyBoundaryMesh& patches1 = mesh1.boundaryMesh();
 
    const primitiveFacePatch& cutFaces = coupleInfo.cutFaces();
    const indirectPrimitivePatch& masterPatch = coupleInfo.masterPatch();
    const indirectPrimitivePatch& slavePatch = coupleInfo.slavePatch();
 
 
    // Points
    // ~~~~~~
 
    // Storage for new points
    allPoints.setSize(mesh0.nPoints() + mesh1.nPoints());
    label allPointI = 0;
 
    from0ToAllPoints.setSize(mesh0.nPoints());
    from0ToAllPoints = -1;
    from1ToAllPoints.setSize(mesh1.nPoints());
    from1ToAllPoints = -1;
 
    // Copy coupled points (on cut)
    {
        const pointField& cutPoints = coupleInfo.cutPoints();
 
        //const labelListList& cutToMasterPoints =
        //   coupleInfo.cutToMasterPoints();
        labelListList cutToMasterPoints
        (
            invertOneToMany
            (
                cutPoints.size(),
                coupleInfo.masterToCutPoints()
            )
        );
 
        //const labelListList& cutToSlavePoints =
        //    coupleInfo.cutToSlavePoints();
        labelListList cutToSlavePoints
        (
            invertOneToMany
            (
                cutPoints.size(),
                coupleInfo.slaveToCutPoints()
            )
        );
 
        forAll(cutPoints, i)
        {
            allPoints[allPointI] = cutPoints[i];
 
            // Mark all master and slave points referring to this point.
 
            const labelList& masterPoints = cutToMasterPoints[i];
 
            forAll(masterPoints, j)
            {
                label mesh0PointI = masterPatch.meshPoints()[masterPoints[j]];
                from0ToAllPoints[mesh0PointI] = allPointI;
            }
 
            const labelList& slavePoints = cutToSlavePoints[i];
 
            forAll(slavePoints, j)
            {
                label mesh1PointI = slavePatch.meshPoints()[slavePoints[j]];
                from1ToAllPoints[mesh1PointI] = allPointI;
            }
            allPointI++;
        }
    }
 
    // Add uncoupled mesh0 points
    forAll(mesh0.points(), pointI)
    {
        if (from0ToAllPoints[pointI] == -1)
        {
            allPoints[allPointI] = mesh0.points()[pointI];
            from0ToAllPoints[pointI] = allPointI;
            allPointI++;
        }
    }
 
    // Add uncoupled mesh1 points
    forAll(mesh1.points(), pointI)
    {
        if (from1ToAllPoints[pointI] == -1)
        {
            allPoints[allPointI] = mesh1.points()[pointI];
            from1ToAllPoints[pointI] = allPointI;
            allPointI++;
        }
    }
 
    allPoints.setSize(allPointI);
 
 
    // Faces
    // ~~~~~
 
    // Sizes per patch
    nFacesPerPatch.setSize(nAllPatches);
    nFacesPerPatch = 0;
 
    // Storage for faces and owner/neighbour
    allFaces.setSize(mesh0.nFaces() + mesh1.nFaces());
    allOwner.setSize(allFaces.size());
    allOwner = -1;
    allNeighbour.setSize(allFaces.size());
    allNeighbour = -1;
    label allFaceI = 0;
 
    from0ToAllFaces.setSize(mesh0.nFaces());
    from0ToAllFaces = -1;
    from1ToAllFaces.setSize(mesh1.nFaces());
    from1ToAllFaces = -1;
 
    // Copy mesh0 internal faces (always uncoupled)
    for (label faceI = 0; faceI < mesh0.nInternalFaces(); faceI++)
    {
        allFaces[allFaceI] = renumber(from0ToAllPoints, mesh0.faces()[faceI]);
        allOwner[allFaceI] = mesh0.faceOwner()[faceI];
        allNeighbour[allFaceI] = mesh0.faceNeighbour()[faceI];
        from0ToAllFaces[faceI] = allFaceI++;
    }
 
    // Copy coupled faces. Every coupled face has an equivalent master and
    // slave. Also uncount as boundary faces all the newly coupled faces.
    const labelList& cutToMasterFaces = coupleInfo.cutToMasterFaces();
    const labelList& cutToSlaveFaces = coupleInfo.cutToSlaveFaces();
 
    forAll(cutFaces, i)
    {
        label masterFaceI = cutToMasterFaces[i];
 
        label mesh0FaceI = masterPatch.addressing()[masterFaceI];
 
        if (from0ToAllFaces[mesh0FaceI] == -1)
        {
            // First occurrence of face
            from0ToAllFaces[mesh0FaceI] = allFaceI;
 
            // External face becomes internal so uncount
            label patch0 = patches0.whichPatch(mesh0FaceI);
            nFacesPerPatch[patch0]--;
        }
 
        label slaveFaceI = cutToSlaveFaces[i];
 
        label mesh1FaceI = slavePatch.addressing()[slaveFaceI];
 
        if (from1ToAllFaces[mesh1FaceI] == -1)
        {
            from1ToAllFaces[mesh1FaceI] = allFaceI;
 
            label patch1 = patches1.whichPatch(mesh1FaceI);
            nFacesPerPatch[from1ToAllPatches[patch1]]--;
        }
 
        // Copy cut face (since cutPoints are copied first no renumbering
        // necessary)
        allFaces[allFaceI] = cutFaces[i];
        allOwner[allFaceI] = mesh0.faceOwner()[mesh0FaceI];
        allNeighbour[allFaceI] = mesh1.faceOwner()[mesh1FaceI] + mesh0.nCells();
 
        allFaceI++;
    }
 
    // Copy mesh1 internal faces (always uncoupled)
    for (label faceI = 0; faceI < mesh1.nInternalFaces(); faceI++)
    {
        allFaces[allFaceI] = renumber(from1ToAllPoints, mesh1.faces()[faceI]);
        allOwner[allFaceI] = mesh1.faceOwner()[faceI] + mesh0.nCells();
        allNeighbour[allFaceI] = mesh1.faceNeighbour()[faceI] + mesh0.nCells();
        from1ToAllFaces[faceI] = allFaceI++;
    }
 
    nInternalFaces = allFaceI;
 
    // Copy (unmarked/uncoupled) external faces in new order.
    for (label allPatchI = 0; allPatchI < nAllPatches; allPatchI++)
    {
        if (allPatchI < patches0.size())
        {
            // Patch is present in mesh0
            const polyPatch& pp = patches0[allPatchI];
 
            nFacesPerPatch[allPatchI] += pp.size();
 
            label faceI = pp.start();
 
            forAll(pp, i)
            {
                if (from0ToAllFaces[faceI] == -1)
                {
                    // Is uncoupled face since has not yet been dealt with
                    allFaces[allFaceI] = renumber
                    (
                        from0ToAllPoints,
                        mesh0.faces()[faceI]
                    );
                    allOwner[allFaceI] = mesh0.faceOwner()[faceI];
                    allNeighbour[allFaceI] = -1;
 
                    from0ToAllFaces[faceI] = allFaceI++;
                }
                faceI++;
            }
        }
        if (fromAllTo1Patches[allPatchI] != -1)
        {
            // Patch is present in mesh1
            const polyPatch& pp = patches1[fromAllTo1Patches[allPatchI]];
 
            nFacesPerPatch[allPatchI] += pp.size();
 
            label faceI = pp.start();
 
            forAll(pp, i)
            {
                if (from1ToAllFaces[faceI] == -1)
                {
                    // Is uncoupled face
                    allFaces[allFaceI] = renumber
                    (
                        from1ToAllPoints,
                        mesh1.faces()[faceI]
                    );
                    allOwner[allFaceI] =
                        mesh1.faceOwner()[faceI]
                      + mesh0.nCells();
                    allNeighbour[allFaceI] = -1;
 
                    from1ToAllFaces[faceI] = allFaceI++;
                }
                faceI++;
            }
        }
    }
    allFaces.setSize(allFaceI);
    allOwner.setSize(allFaceI);
    allNeighbour.setSize(allFaceI);
 
 
    // So now we have all ok for one-to-one mapping.
    // For split slace faces:
    // - mesh consistent with slave side
    // - mesh not consistent with owner side. It is not zipped up, the
    //   original faces need edges split.
 
    // Use brute force to prevent having to calculate addressing:
    // - get map from master edge to split edges.
    // - check all faces to find any edge that is split.
    {
        // From two cut-points to labels of cut-points inbetween.
        // (in order: from e[0] to e[1]
        const edgeLookup& cutEdgeToPoints = coupleInfo.cutEdgeToPoints();
 
        // Get map of master face (in mesh labels) that are in cut. These faces
        // do not need to be renumbered.
        labelHashSet masterCutFaces(cutToMasterFaces.size());
        forAll(cutToMasterFaces, i)
        {
            label meshFaceI = masterPatch.addressing()[cutToMasterFaces[i]];
 
            masterCutFaces.insert(meshFaceI);
        }
 
        DynamicList<label> workFace(100);
 
        forAll(from0ToAllFaces, face0)
        {
            if (!masterCutFaces.found(face0))
            {
                label allFaceI = from0ToAllFaces[face0];
 
                insertVertices
                (
                    cutEdgeToPoints,
                    masterPatch.meshPointMap(),
                    coupleInfo.masterToCutPoints(),
                    mesh0.faces()[face0],
 
                    workFace,
                    allFaces[allFaceI]
                );
            }
        }
 
        // Same for slave face
 
        labelHashSet slaveCutFaces(cutToSlaveFaces.size());
        forAll(cutToSlaveFaces, i)
        {
            label meshFaceI = slavePatch.addressing()[cutToSlaveFaces[i]];
 
            slaveCutFaces.insert(meshFaceI);
        }
 
        forAll(from1ToAllFaces, face1)
        {
            if (!slaveCutFaces.found(face1))
            {
                label allFaceI = from1ToAllFaces[face1];
 
                insertVertices
                (
                    cutEdgeToPoints,
                    slavePatch.meshPointMap(),
                    coupleInfo.slaveToCutPoints(),
                    mesh1.faces()[face1],
 
                    workFace,
                    allFaces[allFaceI]
                );
            }
        }
    }
 
    // Now we have a full facelist and owner/neighbour addressing.
 
 
    // Cells
    // ~~~~~
 
    from1ToAllCells.setSize(mesh1.nCells());
    from1ToAllCells = -1;
 
    forAll(mesh1.cells(), i)
    {
        from1ToAllCells[i] = i + mesh0.nCells();
    }
 
    // Make cells (= cell-face addressing)
    nCells = mesh0.nCells() + mesh1.nCells();
    cellList allCells(nCells);
    primitiveMesh::calcCells(allCells, allOwner, allNeighbour, nCells);
 
    // Reorder faces for upper-triangular order.
    labelList oldToNew
    (
        getFaceOrder
        (
            allCells,
            nInternalFaces,
            allOwner,
            allNeighbour
        )
    );
 
    inplaceReorder(oldToNew, allFaces);
    inplaceReorder(oldToNew, allOwner);
    inplaceReorder(oldToNew, allNeighbour);
    inplaceRenumber(oldToNew, from0ToAllFaces);
    inplaceRenumber(oldToNew, from1ToAllFaces);
}
 
 
void Foam::polyMeshAdder::mergePointZones
(
    const label nAllPoints,
    const pointZoneMesh& pz0,
    const pointZoneMesh& pz1,
    const labelList& from0ToAllPoints,
    const labelList& from1ToAllPoints,
 
    DynamicList<word>& zoneNames,
    labelList& from1ToAll,
    List<DynamicList<label> >& pzPoints
)
{
    zoneNames.setCapacity(pz0.size() + pz1.size());
    zoneNames.append(pz0.names());
 
    from1ToAll.setSize(pz1.size());
 
    forAll(pz1, zoneI)
    {
        from1ToAll[zoneI] = zoneIndex(pz1[zoneI].name(), zoneNames);
    }
    zoneNames.shrink();
 
 
 
    // Zone(s) per point. Two levels: if only one zone
    // stored in pointToZone. Any extra stored in additionalPointToZones.
    // This is so we only allocate labelLists per point if absolutely
    // necesary.
    labelList pointToZone(nAllPoints, -1);
    labelListList addPointToZones(nAllPoints);
 
    // mesh0 zones kept
    forAll(pz0, zoneI)
    {
        const pointZone& pz = pz0[zoneI];
 
        forAll(pz, i)
        {
            label point0 = pz[i];
            label allPointI = from0ToAllPoints[point0];
 
            if (pointToZone[allPointI] == -1)
            {
                pointToZone[allPointI] = zoneI;
            }
            else if (pointToZone[allPointI] != zoneI)
            {
                labelList& pZones = addPointToZones[allPointI];
                if (findIndex(pZones, zoneI) == -1)
                {
                    pZones.append(zoneI);
                }
            }
        }
    }
 
    // mesh1 zones renumbered
    forAll(pz1, zoneI)
    {
        const pointZone& pz = pz1[zoneI];
        const label allZoneI = from1ToAll[zoneI];
 
        forAll(pz, i)
        {
            label point1 = pz[i];
            label allPointI = from1ToAllPoints[point1];
 
            if (pointToZone[allPointI] == -1)
            {
                pointToZone[allPointI] = allZoneI;
            }
            else if (pointToZone[allPointI] != allZoneI)
            {
                labelList& pZones = addPointToZones[allPointI];
                if (findIndex(pZones, allZoneI) == -1)
                {
                    pZones.append(allZoneI);
                }
            }
        }
    }
 
    // Extract back into zones
 
    // 1. Count
    labelList nPoints(zoneNames.size(), 0);
    forAll(pointToZone, allPointI)
    {
        label zoneI = pointToZone[allPointI];
        if (zoneI != -1)
        {
            nPoints[zoneI]++;
        }
    }
    forAll(addPointToZones, allPointI)
    {
        const labelList& pZones = addPointToZones[allPointI];
        forAll(pZones, i)
        {
            nPoints[pZones[i]]++;
        }
    }
 
    // 2. Fill
    pzPoints.setSize(zoneNames.size());
    forAll(pzPoints, zoneI)
    {
        pzPoints[zoneI].setCapacity(nPoints[zoneI]);
    }
    forAll(pointToZone, allPointI)
    {
        label zoneI = pointToZone[allPointI];
        if (zoneI != -1)
        {
            pzPoints[zoneI].append(allPointI);
        }
    }
    forAll(addPointToZones, allPointI)
    {
        const labelList& pZones = addPointToZones[allPointI];
        forAll(pZones, i)
        {
            pzPoints[pZones[i]].append(allPointI);
        }
    }
    forAll(pzPoints, i)
    {
        pzPoints[i].shrink();
        stableSort(pzPoints[i]);
    }
}
 
 
void Foam::polyMeshAdder::mergeFaceZones
(
    const labelList& allOwner,
 
    const polyMesh& mesh0,
    const polyMesh& mesh1,
 
    const labelList& from0ToAllFaces,
    const labelList& from1ToAllFaces,
 
    const labelList& from1ToAllCells,
 
    DynamicList<word>& zoneNames,
    labelList& from1ToAll,
    List<DynamicList<label> >& fzFaces,
    List<DynamicList<bool> >& fzFlips
)
{
    const faceZoneMesh& fz0 = mesh0.faceZones();
    const labelList& owner0 = mesh0.faceOwner();
    const faceZoneMesh& fz1 = mesh1.faceZones();
    const labelList& owner1 = mesh1.faceOwner();
 
 
    zoneNames.setCapacity(fz0.size() + fz1.size());
    zoneNames.append(fz0.names());
 
    from1ToAll.setSize(fz1.size());
 
    forAll(fz1, zoneI)
    {
        from1ToAll[zoneI] = zoneIndex(fz1[zoneI].name(), zoneNames);
    }
    zoneNames.shrink();
 
 
    // Zone(s) per face
    labelList faceToZone(allOwner.size(), -1);
    labelListList addFaceToZones(allOwner.size());
    boolList faceToFlip(allOwner.size(), false);
    boolListList addFaceToFlips(allOwner.size());
 
    // mesh0 zones kept
    forAll(fz0, zoneI)
    {
        const labelList& addressing = fz0[zoneI];
        const boolList& flipMap = fz0[zoneI].flipMap();
 
        forAll(addressing, i)
        {
            label face0 = addressing[i];
            bool flip0 = flipMap[i];
 
            label allFaceI = from0ToAllFaces[face0];
            if (allFaceI != -1)
            {
                // Check if orientation same
                label allCell0 = owner0[face0];
                if (allOwner[allFaceI] != allCell0)
                {
                    flip0 = !flip0;
                }
 
                if (faceToZone[allFaceI] == -1)
                {
                    faceToZone[allFaceI] = zoneI;
                    faceToFlip[allFaceI] = flip0;
                }
                else if (faceToZone[allFaceI] != zoneI)
                {
                    labelList& fZones = addFaceToZones[allFaceI];
                    boolList& flipZones = addFaceToFlips[allFaceI];
 
                    if (findIndex(fZones, zoneI) == -1)
                    {
                        fZones.append(zoneI);
                        flipZones.append(flip0);
                    }
                }
            }
        }
    }
 
    // mesh1 zones renumbered
    forAll(fz1, zoneI)
    {
        const labelList& addressing = fz1[zoneI];
        const boolList& flipMap = fz1[zoneI].flipMap();
 
        const label allZoneI = from1ToAll[zoneI];
 
        forAll(addressing, i)
        {
            label face1 = addressing[i];
            bool flip1 = flipMap[i];
 
            label allFaceI = from1ToAllFaces[face1];
            if (allFaceI != -1)
            {
                // Check if orientation same
                label allCell1 = from1ToAllCells[owner1[face1]];
                if (allOwner[allFaceI] != allCell1)
                {
                    flip1 = !flip1;
                }
 
                if (faceToZone[allFaceI] == -1)
                {
                    faceToZone[allFaceI] = allZoneI;
                    faceToFlip[allFaceI] = flip1;
                }
                else if (faceToZone[allFaceI] != allZoneI)
                {
                    labelList& fZones = addFaceToZones[allFaceI];
                    boolList& flipZones = addFaceToFlips[allFaceI];
 
                    if (findIndex(fZones, allZoneI) == -1)
                    {
                        fZones.append(allZoneI);
                        flipZones.append(flip1);
                    }
                }
            }
        }
    }
 
 
    // Extract back into zones
 
    // 1. Count
    labelList nFaces(zoneNames.size(), 0);
    forAll(faceToZone, allFaceI)
    {
        label zoneI = faceToZone[allFaceI];
        if (zoneI != -1)
        {
            nFaces[zoneI]++;
        }
    }
    forAll(addFaceToZones, allFaceI)
    {
        const labelList& fZones = addFaceToZones[allFaceI];
        forAll(fZones, i)
        {
            nFaces[fZones[i]]++;
        }
    }
 
    // 2. Fill
    fzFaces.setSize(zoneNames.size());
    fzFlips.setSize(zoneNames.size());
    forAll(fzFaces, zoneI)
    {
        fzFaces[zoneI].setCapacity(nFaces[zoneI]);
        fzFlips[zoneI].setCapacity(nFaces[zoneI]);
    }
    forAll(faceToZone, allFaceI)
    {
        label zoneI = faceToZone[allFaceI];
        bool flip = faceToFlip[allFaceI];
        if (zoneI != -1)
        {
            fzFaces[zoneI].append(allFaceI);
            fzFlips[zoneI].append(flip);
        }
    }
    forAll(addFaceToZones, allFaceI)
    {
        const labelList& fZones = addFaceToZones[allFaceI];
        const boolList& flipZones = addFaceToFlips[allFaceI];
 
        forAll(fZones, i)
        {
            label zoneI = fZones[i];
            fzFaces[zoneI].append(allFaceI);
            fzFlips[zoneI].append(flipZones[i]);
        }
    }
 
    forAll(fzFaces, i)
    {
        fzFaces[i].shrink();
        fzFlips[i].shrink();
 
        labelList order;
        sortedOrder(fzFaces[i], order);
        fzFaces[i] = UIndirectList<label>(fzFaces[i], order)();
        fzFlips[i] = UIndirectList<bool>(fzFlips[i], order)();
    }
}
 
 
void Foam::polyMeshAdder::mergeCellZones
(
    const label nAllCells,
 
    const cellZoneMesh& cz0,
    const cellZoneMesh& cz1,
    const labelList& from1ToAllCells,
 
    DynamicList<word>& zoneNames,
    labelList& from1ToAll,
    List<DynamicList<label> >& czCells
)
{
    zoneNames.setCapacity(cz0.size() + cz1.size());
    zoneNames.append(cz0.names());
 
    from1ToAll.setSize(cz1.size());
    forAll(cz1, zoneI)
    {
        from1ToAll[zoneI] = zoneIndex(cz1[zoneI].name(), zoneNames);
    }
    zoneNames.shrink();
 
 
    // Zone(s) per cell. Two levels: if only one zone
    // stored in cellToZone. Any extra stored in additionalCellToZones.
    // This is so we only allocate labelLists per cell if absolutely
    // necesary.
    labelList cellToZone(nAllCells, -1);
    labelListList addCellToZones(nAllCells);
 
    // mesh0 zones kept
    forAll(cz0, zoneI)
    {
        const cellZone& cz = cz0[zoneI];
        forAll(cz, i)
        {
            label cell0 = cz[i];
 
            if (cellToZone[cell0] == -1)
            {
                cellToZone[cell0] = zoneI;
            }
            else if (cellToZone[cell0] != zoneI)
            {
                labelList& cZones = addCellToZones[cell0];
                if (findIndex(cZones, zoneI) == -1)
                {
                    cZones.append(zoneI);
                }
            }
        }
    }
 
    // mesh1 zones renumbered
    forAll(cz1, zoneI)
    {
        const cellZone& cz = cz1[zoneI];
        const label allZoneI = from1ToAll[zoneI];
        forAll(cz, i)
        {
            label cell1 = cz[i];
            label allCellI = from1ToAllCells[cell1];
 
            if (cellToZone[allCellI] == -1)
            {
                cellToZone[allCellI] = allZoneI;
            }
            else if (cellToZone[allCellI] != allZoneI)
            {
                labelList& cZones = addCellToZones[allCellI];
                if (findIndex(cZones, allZoneI) == -1)
                {
                    cZones.append(allZoneI);
                }
            }
        }
    }
 
    // Extract back into zones
 
    // 1. Count
    labelList nCells(zoneNames.size(), 0);
    forAll(cellToZone, allCellI)
    {
        label zoneI = cellToZone[allCellI];
        if (zoneI != -1)
        {
            nCells[zoneI]++;
        }
    }
    forAll(addCellToZones, allCellI)
    {
        const labelList& cZones = addCellToZones[allCellI];
        forAll(cZones, i)
        {
            nCells[cZones[i]]++;
        }
    }
 
    // 2. Fill
    czCells.setSize(zoneNames.size());
    forAll(czCells, zoneI)
    {
        czCells[zoneI].setCapacity(nCells[zoneI]);
    }
    forAll(cellToZone, allCellI)
    {
        label zoneI = cellToZone[allCellI];
        if (zoneI != -1)
        {
            czCells[zoneI].append(allCellI);
        }
    }
    forAll(addCellToZones, allCellI)
    {
        const labelList& cZones = addCellToZones[allCellI];
        forAll(cZones, i)
        {
            czCells[cZones[i]].append(allCellI);
        }
    }
    forAll(czCells, i)
    {
        czCells[i].shrink();
        stableSort(czCells[i]);
    }
}
 
 
void Foam::polyMeshAdder::mergeZones
(
    const label nAllPoints,
    const labelList& allOwner,
    const label nAllCells,
 
    const polyMesh& mesh0,
    const polyMesh& mesh1,
    const labelList& from0ToAllPoints,
    const labelList& from0ToAllFaces,
 
    const labelList& from1ToAllPoints,
    const labelList& from1ToAllFaces,
    const labelList& from1ToAllCells,
 
    DynamicList<word>& pointZoneNames,
    List<DynamicList<label> >& pzPoints,
 
    DynamicList<word>& faceZoneNames,
    List<DynamicList<label> >& fzFaces,
    List<DynamicList<bool> >& fzFlips,
 
    DynamicList<word>& cellZoneNames,
    List<DynamicList<label> >& czCells
)
{
    labelList from1ToAllPZones;
    mergePointZones
    (
        nAllPoints,
        mesh0.pointZones(),
        mesh1.pointZones(),
        from0ToAllPoints,
        from1ToAllPoints,
 
        pointZoneNames,
        from1ToAllPZones,
        pzPoints
    );
 
    labelList from1ToAllFZones;
    mergeFaceZones
    (
        allOwner,
        mesh0,
        mesh1,
        from0ToAllFaces,
        from1ToAllFaces,
        from1ToAllCells,
 
        faceZoneNames,
        from1ToAllFZones,
        fzFaces,
        fzFlips
    );
 
    labelList from1ToAllCZones;
    mergeCellZones
    (
        nAllCells,
        mesh0.cellZones(),
        mesh1.cellZones(),
        from1ToAllCells,
 
        cellZoneNames,
        from1ToAllCZones,
        czCells
    );
}
 
 
void Foam::polyMeshAdder::addZones
(
    const DynamicList<word>& pointZoneNames,
    const List<DynamicList<label> >& pzPoints,
 
    const DynamicList<word>& faceZoneNames,
    const List<DynamicList<label> >& fzFaces,
    const List<DynamicList<bool> >& fzFlips,
 
    const DynamicList<word>& cellZoneNames,
    const List<DynamicList<label> >& czCells,
 
    polyMesh& mesh
)
{
    List<pointZone*> pZones(pzPoints.size());
    forAll(pZones, i)
    {
        pZones[i] = new pointZone
        (
            pointZoneNames[i],
            pzPoints[i],
            i,
            mesh.pointZones()
        );
    }
 
    List<faceZone*> fZones(fzFaces.size());
    forAll(fZones, i)
    {
        fZones[i] = new faceZone
        (
            faceZoneNames[i],
            fzFaces[i],
            fzFlips[i],
            i,
            mesh.faceZones()
        );
    }
 
    List<cellZone*> cZones(czCells.size());
    forAll(cZones, i)
    {
        cZones[i] = new cellZone
        (
            cellZoneNames[i],
            czCells[i],
            i,
            mesh.cellZones()
        );
    }
 
    mesh.addZones
    (
        pZones,
        fZones,
        cZones
    );
}
 
 
 
// * * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * //
 
// Returns new mesh and sets
// - map from new cell/face/point/patch to either mesh0 or mesh1
//
// mesh0Faces/mesh1Faces: corresponding faces on both meshes.
Foam::autoPtr<Foam::polyMesh> Foam::polyMeshAdder::add
(
    const IOobject& io,
    const polyMesh& mesh0,
    const polyMesh& mesh1,
    const faceCoupleInfo& coupleInfo,
    autoPtr<mapAddedPolyMesh>& mapPtr
)
{
    const polyBoundaryMesh& patches0 = mesh0.boundaryMesh();
    const polyBoundaryMesh& patches1 = mesh1.boundaryMesh();
 
 
    DynamicList<word> allPatchNames(patches0.size() + patches1.size());
    DynamicList<word> allPatchTypes(allPatchNames.size());
 
    // Patch maps
    labelList from1ToAllPatches(patches1.size());
    labelList fromAllTo1Patches(allPatchNames.size(), -1);
 
    mergePatchNames
    (
        patches0,
        patches1,
        allPatchNames,
        allPatchTypes,
        from1ToAllPatches,
        fromAllTo1Patches
    );
 
 
    // New points
    pointField allPoints;
 
    // Map from mesh0/1 points to allPoints.
    labelList from0ToAllPoints(mesh0.nPoints(), -1);
    labelList from1ToAllPoints(mesh1.nPoints(), -1);
 
    // New faces
    faceList allFaces;
    label nInternalFaces;
 
    // New cells
    labelList allOwner;
    labelList allNeighbour;
    label nCells;
 
    // Sizes per patch
    labelList nFaces(allPatchNames.size(), 0);
 
    // Maps
    labelList from0ToAllFaces(mesh0.nFaces(), -1);
    labelList from1ToAllFaces(mesh1.nFaces(), -1);
 
    // Map
    labelList from1ToAllCells(mesh1.nCells(), -1);
 
    mergePrimitives
    (
        mesh0,
        mesh1,
        coupleInfo,
 
        allPatchNames.size(),
        fromAllTo1Patches,
        from1ToAllPatches,
 
        allPoints,
        from0ToAllPoints,
        from1ToAllPoints,
 
        allFaces,
        allOwner,
        allNeighbour,
        nInternalFaces,
        nFaces,
        nCells,
 
        from0ToAllFaces,
        from1ToAllFaces,
        from1ToAllCells
    );
 
 
    // Zones
    // ~~~~~
 
    DynamicList<word> pointZoneNames;
    List<DynamicList<label> > pzPoints;
 
    DynamicList<word> faceZoneNames;
    List<DynamicList<label> > fzFaces;
    List<DynamicList<bool> > fzFlips;
 
    DynamicList<word> cellZoneNames;
    List<DynamicList<label> > czCells;
 
    mergeZones
    (
        allPoints.size(),
        allOwner,
        nCells,
 
        mesh0,
        mesh1,
 
        from0ToAllPoints,
        from0ToAllFaces,
 
        from1ToAllPoints,
        from1ToAllFaces,
        from1ToAllCells,
 
        pointZoneNames,
        pzPoints,
 
        faceZoneNames,
        fzFaces,
        fzFlips,
 
        cellZoneNames,
        czCells
    );
 
 
    // Patches
    // ~~~~~~~
 
    // Map from 0 to all patches (since gets compacted)
    labelList from0ToAllPatches(patches0.size(), -1);
 
    List<polyPatch*> allPatches
    (
        combinePatches
        (
            mesh0,
            mesh1,
            patches0,           // Should be boundaryMesh() on new mesh.
            allPatchNames.size(),
            fromAllTo1Patches,
            mesh0.nInternalFaces()
          + mesh1.nInternalFaces()
          + coupleInfo.cutFaces().size(),
            nFaces,
 
            from0ToAllPatches,
            from1ToAllPatches
        )
    );
 
 
    // Map information
    // ~~~~~~~~~~~~~~~
 
    mapPtr.reset
    (
        new mapAddedPolyMesh
        (
            mesh0.nPoints(),
            mesh0.nFaces(),
            mesh0.nCells(),
 
            mesh1.nPoints(),
            mesh1.nFaces(),
            mesh1.nCells(),
 
            from0ToAllPoints,
            from0ToAllFaces,
            identity(mesh0.nCells()),
 
            from1ToAllPoints,
            from1ToAllFaces,
            from1ToAllCells,
 
            from0ToAllPatches,
            from1ToAllPatches,
            getPatchSizes(patches0),
            getPatchStarts(patches0)
        )
    );
 
 
 
    // Now we have extracted all information from all meshes.
    // ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
    // Construct mesh
    autoPtr<polyMesh> tmesh
    (
        new polyMesh
        (
            io,
            xferMove(allPoints),
            xferMove(allFaces),
            xferMove(allOwner),
            xferMove(allNeighbour)
        )
    );
    polyMesh& mesh = tmesh();
 
    // Add zones to new mesh.
    addZones
    (
        pointZoneNames,
        pzPoints,
 
        faceZoneNames,
        fzFaces,
        fzFlips,
 
        cellZoneNames,
        czCells,
        mesh
    );
 
    // Add patches to new mesh
    mesh.addPatches(allPatches);
 
    return tmesh;
}
 
 
// Inplace add mesh1 to mesh0
Foam::autoPtr<Foam::mapAddedPolyMesh> Foam::polyMeshAdder::add
(
    polyMesh& mesh0,
    const polyMesh& mesh1,
    const faceCoupleInfo& coupleInfo,
    const bool validBoundary
)
{
    const polyBoundaryMesh& patches0 = mesh0.boundaryMesh();
    const polyBoundaryMesh& patches1 = mesh1.boundaryMesh();
 
    DynamicList<word> allPatchNames(patches0.size() + patches1.size());
    DynamicList<word> allPatchTypes(allPatchNames.size());
 
    // Patch maps
    labelList from1ToAllPatches(patches1.size());
    labelList fromAllTo1Patches(allPatchNames.size(), -1);
 
    mergePatchNames
    (
        patches0,
        patches1,
        allPatchNames,
        allPatchTypes,
        from1ToAllPatches,
        fromAllTo1Patches
    );
 
 
    // New points
    pointField allPoints;
 
    // Map from mesh0/1 points to allPoints.
    labelList from0ToAllPoints(mesh0.nPoints(), -1);
    labelList from1ToAllPoints(mesh1.nPoints(), -1);
 
    // New faces
    faceList allFaces;
    labelList allOwner;
    labelList allNeighbour;
    label nInternalFaces;
    // Sizes per patch
    labelList nFaces(allPatchNames.size(), 0);
    label nCells;
 
    // Maps
    labelList from0ToAllFaces(mesh0.nFaces(), -1);
    labelList from1ToAllFaces(mesh1.nFaces(), -1);
    // Map
    labelList from1ToAllCells(mesh1.nCells(), -1);
 
    mergePrimitives
    (
        mesh0,
        mesh1,
        coupleInfo,
 
        allPatchNames.size(),
        fromAllTo1Patches,
        from1ToAllPatches,
 
        allPoints,
        from0ToAllPoints,
        from1ToAllPoints,
 
        allFaces,
        allOwner,
        allNeighbour,
        nInternalFaces,
        nFaces,
        nCells,
 
        from0ToAllFaces,
        from1ToAllFaces,
        from1ToAllCells
    );
 
 
    // Zones
    // ~~~~~
 
    DynamicList<word> pointZoneNames;
    List<DynamicList<label> > pzPoints;
 
    DynamicList<word> faceZoneNames;
    List<DynamicList<label> > fzFaces;
    List<DynamicList<bool> > fzFlips;
 
    DynamicList<word> cellZoneNames;
    List<DynamicList<label> > czCells;
 
    mergeZones
    (
        allPoints.size(),
        allOwner,
        nCells,
 
        mesh0,
        mesh1,
 
        from0ToAllPoints,
        from0ToAllFaces,
 
        from1ToAllPoints,
        from1ToAllFaces,
        from1ToAllCells,
 
        pointZoneNames,
        pzPoints,
 
        faceZoneNames,
        fzFaces,
        fzFlips,
 
        cellZoneNames,
        czCells
    );
 
 
    // Patches
    // ~~~~~~~
 
 
    // Store mesh0 patch info before modifying patches0.
    labelList mesh0PatchSizes(getPatchSizes(patches0));
    labelList mesh0PatchStarts(getPatchStarts(patches0));
 
    // Map from 0 to all patches (since gets compacted)
    labelList from0ToAllPatches(patches0.size(), -1);
 
    // Inplace extend mesh0 patches (note that patches0.size() now also
    // has changed)
    polyBoundaryMesh& allPatches =
        const_cast<polyBoundaryMesh&>(mesh0.boundaryMesh());
    allPatches.setSize(allPatchNames.size());
    labelList patchSizes(allPatches.size());
    labelList patchStarts(allPatches.size());
 
    label startFaceI = nInternalFaces;
 
    // Copy patches0 with new sizes. First patches always come from
    // mesh0 and will always be present.
    label allPatchI = 0;
 
    forAll(from0ToAllPatches, patch0)
    {
        // Originates from mesh0. Clone with new size & filter out empty
        // patch.
 
        if (nFaces[patch0] == 0 && isA<processorPolyPatch>(allPatches[patch0]))
        {
            //Pout<< "Removing zero sized mesh0 patch " << allPatchNames[patch0]
            //    << endl;
            from0ToAllPatches[patch0] = -1;
            // Check if patch was also in mesh1 and update its addressing if so.
            if (fromAllTo1Patches[patch0] != -1)
            {
                from1ToAllPatches[fromAllTo1Patches[patch0]] = -1;
            }
        }
        else
        {
            // Clone. Note dummy size and start. Gets overwritten later in
            // resetPrimitives. This avoids getting temporarily illegal
            // SubList construction in polyPatch.
            allPatches.set
            (
                allPatchI,
                allPatches[patch0].clone
                (
                    allPatches,
                    allPatchI,
                    0,          // dummy size
                    0           // dummy start
                )
            );
            patchSizes[allPatchI] = nFaces[patch0];
            patchStarts[allPatchI] = startFaceI;
 
            // Record new index in allPatches
            from0ToAllPatches[patch0] = allPatchI;
 
            // Check if patch was also in mesh1 and update its addressing if so.
            if (fromAllTo1Patches[patch0] != -1)
            {
                from1ToAllPatches[fromAllTo1Patches[patch0]] = allPatchI;
            }
 
            startFaceI += nFaces[patch0];
 
            allPatchI++;
        }
    }
 
    // Copy unique patches of mesh1.
    forAll(from1ToAllPatches, patch1)
    {
        label uncompactAllPatchI = from1ToAllPatches[patch1];
 
        if (uncompactAllPatchI >= from0ToAllPatches.size())
        {
            // Patch has not been merged with any mesh0 patch.
 
            if
            (
                nFaces[uncompactAllPatchI] == 0
             && isA<processorPolyPatch>(patches1[patch1])
            )
            {
                //Pout<< "Removing zero sized mesh1 patch "
                //    << allPatchNames[uncompactAllPatchI] << endl;
                from1ToAllPatches[patch1] = -1;
            }
            else
            {
                // Clone.
                allPatches.set
                (
                    allPatchI,
                    patches1[patch1].clone
                    (
                        allPatches,
                        allPatchI,
                        0,          // dummy size
                        0           // dummy start
                    )
                );
                patchSizes[allPatchI] = nFaces[uncompactAllPatchI];
                patchStarts[allPatchI] = startFaceI;
 
                // Record new index in allPatches
                from1ToAllPatches[patch1] = allPatchI;
 
                startFaceI += nFaces[uncompactAllPatchI];
 
                allPatchI++;
            }
        }
    }
 
    allPatches.setSize(allPatchI);
    patchSizes.setSize(allPatchI);
    patchStarts.setSize(allPatchI);
 
 
    // Construct map information before changing mesh0 primitives
    // ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
    autoPtr<mapAddedPolyMesh> mapPtr
    (
        new mapAddedPolyMesh
        (
            mesh0.nPoints(),
            mesh0.nFaces(),
            mesh0.nCells(),
 
            mesh1.nPoints(),
            mesh1.nFaces(),
            mesh1.nCells(),
 
            from0ToAllPoints,
            from0ToAllFaces,
            identity(mesh0.nCells()),
 
            from1ToAllPoints,
            from1ToAllFaces,
            from1ToAllCells,
 
            from0ToAllPatches,
            from1ToAllPatches,
 
            mesh0PatchSizes,
            mesh0PatchStarts
        )
    );
 
 
 
    // Now we have extracted all information from all meshes.
    // ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
    mesh0.resetMotion();    // delete any oldPoints.
    mesh0.resetPrimitives
    (
        xferMove(allPoints),
        xferMove(allFaces),
        xferMove(allOwner),
        xferMove(allNeighbour),
        patchSizes,     // size
        patchStarts,    // patchstarts
        validBoundary   // boundary valid?
    );
 
    // Add zones to new mesh.
    mesh0.pointZones().clear();
    mesh0.faceZones().clear();
    mesh0.cellZones().clear();
    addZones
    (
        pointZoneNames,
        pzPoints,
 
        faceZoneNames,
        fzFaces,
        fzFlips,
 
        cellZoneNames,
        czCells,
        mesh0
    );
 
    return mapPtr;
}
 
 
Foam::Map<Foam::label> Foam::polyMeshAdder::findSharedPoints
(
    const polyMesh& mesh,
    const scalar mergeDist
)
{
    const labelList& sharedPointLabels = mesh.globalData().sharedPointLabels();
    const labelList& sharedPointAddr = mesh.globalData().sharedPointAddr();
 
    // Because of adding the missing pieces e.g. when redistributing a mesh
    // it can be that there are multiple points on the same processor that
    // refer to the same shared point.
 
    // Invert point-to-shared addressing
    // ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
    Map<labelList> sharedToMesh(sharedPointLabels.size());
 
    label nMultiple = 0;
 
    forAll(sharedPointLabels, i)
    {
        label pointI = sharedPointLabels[i];
 
        label sharedI = sharedPointAddr[i];
 
        Map<labelList>::iterator iter = sharedToMesh.find(sharedI);
 
        if (iter != sharedToMesh.end())
        {
            // sharedI already used by other point. Add this one.
 
            nMultiple++;
 
            labelList& connectedPointLabels = iter();
 
            label sz = connectedPointLabels.size();
 
            // Check just to make sure.
            if (findIndex(connectedPointLabels, pointI) != -1)
            {
                FatalErrorInFunction
                    << "Duplicate point in sharedPoint addressing." << endl
                    << "When trying to add point " << pointI << " on shared "
                    << sharedI  << " with connected points "
                    << connectedPointLabels
                    << abort(FatalError);
            }
 
            connectedPointLabels.setSize(sz+1);
            connectedPointLabels[sz] = pointI;
        }
        else
        {
            sharedToMesh.insert(sharedI, labelList(1, pointI));
        }
    }
 
 
    // Assign single master for every shared with multiple geometric points
    // ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
    Map<label> pointToMaster(nMultiple);
 
    forAllConstIter(Map<labelList>, sharedToMesh, iter)
    {
        const labelList& connectedPointLabels = iter();
 
        //Pout<< "For shared:" << iter.key()
        //    << " found points:" << connectedPointLabels
        //    << " at coords:"
        //    <<  pointField(mesh.points(), connectedPointLabels) << endl;
 
        if (connectedPointLabels.size() > 1)
        {
            const pointField connectedPoints
            (
                mesh.points(),
                connectedPointLabels
            );
 
            labelList toMergedPoints;
            label nUnique = Foam::mergePoints
            (
                connectedPoints,
                mergeDist,
                false,
                toMergedPoints
            );
 
            if (nUnique < connectedPoints.size())
            {
                // Invert toMergedPoints
                const labelListList mergeSets
                (
                    invertOneToMany
                    (
                        nUnique,
                        toMergedPoints
                    )
                );
 
                // Find master for valid merges
                forAll(mergeSets, setI)
                {
                    const labelList& mergeSet = mergeSets[setI];
 
                    if (mergeSet.size() > 1)
                    {
                        // Pick lowest numbered point
                        label masterPointI = labelMax;
 
                        forAll(mergeSet, i)
                        {
                            label pointI = connectedPointLabels[mergeSet[i]];
 
                            masterPointI = min(masterPointI, pointI);
                        }
 
                        forAll(mergeSet, i)
                        {
                            label pointI = connectedPointLabels[mergeSet[i]];
 
                            //Pout<< "Merging point " << pointI
                            //    << " at " << mesh.points()[pointI]
                            //    << " into master point "
                            //    << masterPointI
                            //    << " at " << mesh.points()[masterPointI]
                            //    << endl;
 
                            pointToMaster.insert(pointI, masterPointI);
                        }
                    }
                }
            }
        }
    }
 
    //- Old: geometric merging. Causes problems for two close shared points.
    //labelList sharedToMerged;
    //label nUnique = Foam::mergePoints
    //(
    //    pointField
    //    (
    //        mesh.points(),
    //        sharedPointLabels
    //    ),
    //    mergeDist,
    //    false,
    //    sharedToMerged
    //);
    //
    //
    //Map<label> pointToMaster(10*sharedToMerged.size());
    //
    //if (nUnique < sharedPointLabels.size())
    //{
    //    labelListList mergeSets
    //    (
    //        invertOneToMany
    //        (
    //            sharedToMerged.size(),
    //            sharedToMerged
    //        )
    //    );
    //
    //    label nMergeSets = 0;
    //
    //    forAll(mergeSets, setI)
    //    {
    //        const labelList& mergeSet = mergeSets[setI];
    //
    //        if (mergeSet.size() > 1)
    //        {
    //            // Take as master the shared point with the lowest mesh
    //            // point label. (rather arbitrarily - could use max or
    //            // any other one of the points)
    //
    //            nMergeSets++;
    //
    //            label masterI = labelMax;
    //
    //            forAll(mergeSet, i)
    //            {
    //                label sharedI = mergeSet[i];
    //
    //                masterI = min(masterI, sharedPointLabels[sharedI]);
    //            }
    //
    //            forAll(mergeSet, i)
    //            {
    //                label sharedI = mergeSet[i];
    //
    //                pointToMaster.insert(sharedPointLabels[sharedI], masterI);
    //            }
    //        }
    //    }
    //
    //    //if (debug)
    //    //{
    //    //    Pout<< "polyMeshAdder : merging:"
    //    //        << pointToMaster.size() << " into " << nMergeSets
    //    //        << " sets." << endl;
    //    //}
    //}
 
    return pointToMaster;
}
 
 
void Foam::polyMeshAdder::mergePoints
(
    const polyMesh& mesh,
    const Map<label>& pointToMaster,
    polyTopoChange& meshMod
)
{
    // Remove all non-master points.
    forAll(mesh.points(), pointI)
    {
        Map<label>::const_iterator iter = pointToMaster.find(pointI);
 
        if (iter != pointToMaster.end())
        {
            if (iter() != pointI)
            {
                meshMod.removePoint(pointI, iter());
            }
        }
    }
 
    // Modify faces for points. Note: could use pointFaces here but want to
    // avoid addressing calculation.
    const faceList& faces = mesh.faces();
 
    forAll(faces, faceI)
    {
        const face& f = faces[faceI];
 
        bool hasMerged = false;
 
        forAll(f, fp)
        {
            label pointI = f[fp];
 
            Map<label>::const_iterator iter = pointToMaster.find(pointI);
 
            if (iter != pointToMaster.end())
            {
                if (iter() != pointI)
                {
                    hasMerged = true;
                    break;
                }
            }
        }
 
        if (hasMerged)
        {
            face newF(f);
 
            forAll(f, fp)
            {
                label pointI = f[fp];
 
                Map<label>::const_iterator iter = pointToMaster.find(pointI);
 
                if (iter != pointToMaster.end())
                {
                    newF[fp] = iter();
                }
            }
 
            label patchID = mesh.boundaryMesh().whichPatch(faceI);
            label nei = (patchID == -1 ? mesh.faceNeighbour()[faceI] : -1);
            label zoneID = mesh.faceZones().whichZone(faceI);
            bool zoneFlip = false;
 
            if (zoneID >= 0)
            {
                const faceZone& fZone = mesh.faceZones()[zoneID];
                zoneFlip = fZone.flipMap()[fZone.whichFace(faceI)];
            }
 
            meshMod.setAction
            (
                polyModifyFace
                (
                    newF,                       // modified face
                    faceI,                      // label of face
                    mesh.faceOwner()[faceI],    // owner
                    nei,                        // neighbour
                    false,                      // face flip
                    patchID,                    // patch for face
                    false,                      // remove from zone
                    zoneID,                     // zone for face
                    zoneFlip                    // face flip in zone
                )
            );
        }
    }
}
 
 
// ************************************************************************* //