mapLagrangian.C

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/*---------------------------------------------------------------------------*\
  =========                 |
  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
   \\    /   O peration     |
    \\  /    A nd           | Copyright (C) 2011-2015 OpenFOAM Foundation
     \\/     M anipulation  |
-------------------------------------------------------------------------------
License
    This file is part of OpenFOAM.
 
    OpenFOAM is free software: you can redistribute it and/or modify it
    under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.
 
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    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
    for more details.
 
    You should have received a copy of the GNU General Public License
    along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
 
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#include "MapLagrangianFields.H"
#include "passiveParticleCloud.H"
#include "meshSearch.H"
 
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
namespace Foam
{
 
static const scalar perturbFactor = 1e-6;
 
 
// Special version of findCell that generates a cell guaranteed to be
// compatible with tracking.
static label findCell(const Cloud<passiveParticle>& cloud, const point& pt)
{
    label cellI = -1;
    label tetFaceI = -1;
    label tetPtI = -1;
 
    const polyMesh& mesh = cloud.pMesh();
 
    mesh.findCellFacePt(pt, cellI, tetFaceI, tetPtI);
 
    if (cellI >= 0)
    {
        return cellI;
    }
    else
    {
        // See if particle on face by finding nearest face and shifting
        // particle.
 
        meshSearch meshSearcher
        (
            mesh,
            polyMesh::FACE_PLANES    // no decomposition needed
        );
 
        label faceI = meshSearcher.findNearestBoundaryFace(pt);
 
        if (faceI >= 0)
        {
            const point& cc = mesh.cellCentres()[mesh.faceOwner()[faceI]];
 
            const point perturbPt = (1-perturbFactor)*pt+perturbFactor*cc;
 
            mesh.findCellFacePt(perturbPt, cellI, tetFaceI, tetPtI);
 
            return cellI;
        }
    }
 
    return -1;
}
 
 
void mapLagrangian(const meshToMesh& interp)
{
    // Determine which particles are in meshTarget
    // ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
    const polyMesh& meshSource = interp.srcRegion();
    const polyMesh& meshTarget = interp.tgtRegion();
    const labelListList& sourceToTarget = interp.srcToTgtCellAddr();
 
    const pointField& targetCc = meshTarget.cellCentres();
 
    fileNameList cloudDirs
    (
        readDir
        (
            meshSource.time().timePath()/cloud::prefix,
            fileName::DIRECTORY
        )
    );
 
    forAll(cloudDirs, cloudI)
    {
        // Search for list of lagrangian objects for this time
        IOobjectList objects
        (
            meshSource,
            meshSource.time().timeName(),
            cloud::prefix/cloudDirs[cloudI]
        );
 
        bool foundPositions =
            returnReduce(objects.found("positions"), orOp<bool>());;
 
        if (foundPositions)
        {
            Info<< nl << "    processing cloud " << cloudDirs[cloudI] << endl;
 
            // Read positions & cell
            passiveParticleCloud sourceParcels
            (
                meshSource,
                cloudDirs[cloudI],
                false
            );
            Info<< "    read " << sourceParcels.size()
                << " parcels from source mesh." << endl;
 
            // Construct empty target cloud
            passiveParticleCloud targetParcels
            (
                meshTarget,
                cloudDirs[cloudI],
                IDLList<passiveParticle>()
            );
 
            particle::TrackingData<passiveParticleCloud> td(targetParcels);
 
            label sourceParticleI = 0;
 
            // Indices of source particles that get added to targetParcels
            DynamicList<label> addParticles(sourceParcels.size());
 
            // Unmapped particles
            labelHashSet unmappedSource(sourceParcels.size());
 
 
            // Initial: track from fine-mesh cell centre to particle position
            // ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
            // This requires there to be no boundary in the way.
 
 
            forAllConstIter(Cloud<passiveParticle>, sourceParcels, iter)
            {
                bool foundCell = false;
 
                // Assume that cell from read parcel is the correct one...
                if (iter().cell() >= 0)
                {
                    const labelList& targetCells =
                        sourceToTarget[iter().cell()];
 
                    // Particle probably in one of the targetcells. Try
                    // all by tracking from their cell centre to the parcel
                    // position.
 
                    forAll(targetCells, i)
                    {
                        // Track from its cellcentre to position to make sure.
                        autoPtr<passiveParticle> newPtr
                        (
                            new passiveParticle
                            (
                                meshTarget,
                                targetCc[targetCells[i]],
                                targetCells[i]
                            )
                        );
                        passiveParticle& newP = newPtr();
 
                        label faceI = newP.track(iter().position(), td);
 
                        if (faceI < 0 && newP.cell() >= 0)
                        {
                            // Hit position.
                            foundCell = true;
                            addParticles.append(sourceParticleI);
                            targetParcels.addParticle(newPtr.ptr());
                            break;
                        }
                    }
                }
 
                if (!foundCell)
                {
                    // Store for closer analysis
                    unmappedSource.insert(sourceParticleI);
                }
 
                sourceParticleI++;
            }
 
            Info<< "    after meshToMesh addressing found "
                << targetParcels.size()
                << " parcels in target mesh." << endl;
 
 
            // Do closer inspection for unmapped particles
            // ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
            if (unmappedSource.size())
            {
                sourceParticleI = 0;
 
                forAllIter(Cloud<passiveParticle>, sourceParcels, iter)
                {
                    if (unmappedSource.found(sourceParticleI))
                    {
                        label targetCell =
                            findCell(targetParcels, iter().position());
 
                        if (targetCell >= 0)
                        {
                            unmappedSource.erase(sourceParticleI);
                            addParticles.append(sourceParticleI);
                            iter().cell() = targetCell;
                            targetParcels.addParticle
                            (
                                sourceParcels.remove(&iter())
                            );
                        }
                    }
                    sourceParticleI++;
                }
            }
            addParticles.shrink();
 
            Info<< "    after additional mesh searching found "
                << targetParcels.size() << " parcels in target mesh." << endl;
 
            if (addParticles.size())
            {
                IOPosition<passiveParticleCloud>(targetParcels).write();
 
                // addParticles now contains the indices of the sourceMesh
                // particles that were appended to the target mesh.
 
                // Map lagrangian fields
                // ~~~~~~~~~~~~~~~~~~~~~
 
                MapLagrangianFields<label>
                (
                    cloudDirs[cloudI],
                    objects,
                    meshTarget,
                    addParticles
                );
                MapLagrangianFields<scalar>
                (
                    cloudDirs[cloudI],
                    objects,
                    meshTarget,
                    addParticles
                );
                MapLagrangianFields<vector>
                (
                    cloudDirs[cloudI],
                    objects,
                    meshTarget,
                    addParticles
                );
                MapLagrangianFields<sphericalTensor>
                (
                    cloudDirs[cloudI],
                    objects,
                    meshTarget,
                    addParticles
                );
                MapLagrangianFields<symmTensor>
                (
                    cloudDirs[cloudI],
                    objects,
                    meshTarget,
                    addParticles
                );
                MapLagrangianFields<tensor>
                (
                    cloudDirs[cloudI],
                    objects,
                    meshTarget,
                    addParticles
                );
            }
        }
    }
}
 
 
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
} // End namespace Foam
 
// ************************************************************************* //