DelaunayMeshIO.C

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/*---------------------------------------------------------------------------*\
  =========                 |
  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
   \\    /   O peration     |
    \\  /    A nd           | Copyright (C) 2012-2015 OpenFOAM Foundation
     \\/     M anipulation  |
-------------------------------------------------------------------------------
License
    This file is part of OpenFOAM.
 
    OpenFOAM is free software: you can redistribute it and/or modify it
    under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.
 
    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
    for more details.
 
    You should have received a copy of the GNU General Public License
    along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
 
\*---------------------------------------------------------------------------*/
 
#include "DelaunayMesh.H"
#include "fvMesh.H"
#include "pointConversion.H"
#include "wallPolyPatch.H"
#include "processorPolyPatch.H"
#include "labelIOField.H"
 
// * * * * * * * * * * * * * Private Member Functions  * * * * * * * * * * * //
 
template<class Triangulation>
void Foam::DelaunayMesh<Triangulation>::sortFaces
(
    faceList& faces,
    labelList& owner,
    labelList& neighbour
) const
{
    // Upper triangular order:
    // + owner is sorted in ascending cell order
    // + within each block of equal value for owner, neighbour is sorted in
    //   ascending cell order.
    // + faces sorted to correspond
    // e.g.
    // owner | neighbour
    // 0     | 2
    // 0     | 23
    // 0     | 71
    // 1     | 23
    // 1     | 24
    // 1     | 91
 
    List<labelPair> ownerNeighbourPair(owner.size());
 
    forAll(ownerNeighbourPair, oNI)
    {
        ownerNeighbourPair[oNI] = labelPair(owner[oNI], neighbour[oNI]);
    }
 
    Info<< nl
        << "Sorting faces, owner and neighbour into upper triangular order"
        << endl;
 
    labelList oldToNew;
 
    sortedOrder(ownerNeighbourPair, oldToNew);
 
    oldToNew = invert(oldToNew.size(), oldToNew);
 
    inplaceReorder(oldToNew, faces);
    inplaceReorder(oldToNew, owner);
    inplaceReorder(oldToNew, neighbour);
}
 
 
template<class Triangulation>
void Foam::DelaunayMesh<Triangulation>::addPatches
(
    const label nInternalFaces,
    faceList& faces,
    labelList& owner,
    PtrList<dictionary>& patchDicts,
    const List<DynamicList<face> >& patchFaces,
    const List<DynamicList<label> >& patchOwners
) const
{
    label nPatches = patchFaces.size();
 
    patchDicts.setSize(nPatches);
    forAll(patchDicts, patchI)
    {
        patchDicts.set(patchI, new dictionary());
    }
 
    label nBoundaryFaces = 0;
 
    forAll(patchFaces, p)
    {
        patchDicts[p].set("nFaces", patchFaces[p].size());
        patchDicts[p].set("startFace", nInternalFaces + nBoundaryFaces);
 
        nBoundaryFaces += patchFaces[p].size();
    }
 
    faces.setSize(nInternalFaces + nBoundaryFaces);
    owner.setSize(nInternalFaces + nBoundaryFaces);
 
    label faceI = nInternalFaces;
 
    forAll(patchFaces, p)
    {
        forAll(patchFaces[p], f)
        {
            faces[faceI] = patchFaces[p][f];
            owner[faceI] = patchOwners[p][f];
 
            faceI++;
        }
    }
}
 
 
// * * * * * * * * * * * * * * Member Operators  * * * * * * * * * * * * * * //
 
template<class Triangulation>
void Foam::DelaunayMesh<Triangulation>::printInfo(Ostream& os) const
{
    PrintTable<word, label> triInfoTable("Mesh Statistics");
 
    triInfoTable.add("Points", Triangulation::number_of_vertices());
    triInfoTable.add("Edges", Triangulation::number_of_finite_edges());
    triInfoTable.add("Faces", Triangulation::number_of_finite_facets());
    triInfoTable.add("Cells", Triangulation::number_of_finite_cells());
 
    scalar minSize = GREAT;
    scalar maxSize = 0;
 
    for
    (
        Finite_vertices_iterator vit = Triangulation::finite_vertices_begin();
        vit != Triangulation::finite_vertices_end();
        ++vit
    )
    {
        // Only internal or boundary vertices have a size
        if (vit->internalOrBoundaryPoint())
        {
            minSize = min(vit->targetCellSize(), minSize);
            maxSize = max(vit->targetCellSize(), maxSize);
        }
    }
 
    Info<< incrIndent;
    triInfoTable.print(Info, true, true);
 
    Info<< "Size (Min/Max) = "
        << returnReduce(minSize, minOp<scalar>()) << " "
        << returnReduce(maxSize, maxOp<scalar>()) << endl;
 
    Info<< decrIndent;
}
 
 
template<class Triangulation>
void Foam::DelaunayMesh<Triangulation>::printVertexInfo(Ostream& os) const
{
    label nInternal = 0;
    label nInternalRef = 0;
    label nUnassigned = 0;
    label nUnassignedRef = 0;
    label nInternalNearBoundary = 0;
    label nInternalNearBoundaryRef = 0;
    label nInternalSurface = 0;
    label nInternalSurfaceRef = 0;
    label nInternalFeatureEdge = 0;
    label nInternalFeatureEdgeRef = 0;
    label nInternalFeaturePoint = 0;
    label nInternalFeaturePointRef = 0;
    label nExternalSurface = 0;
    label nExternalSurfaceRef = 0;
    label nExternalFeatureEdge = 0;
    label nExternalFeatureEdgeRef = 0;
    label nExternalFeaturePoint = 0;
    label nExternalFeaturePointRef = 0;
    label nFar = 0;
    label nReferred = 0;
 
    for
    (
        Finite_vertices_iterator vit = Triangulation::finite_vertices_begin();
        vit != Triangulation::finite_vertices_end();
        ++vit
    )
    {
        if (vit->type() == Vb::vtInternal)
        {
            if (vit->referred())
            {
                nReferred++;
                nInternalRef++;
            }
 
            nInternal++;
        }
        else if (vit->type() == Vb::vtUnassigned)
        {
            if (vit->referred())
            {
                nReferred++;
                nUnassignedRef++;
            }
 
            nUnassigned++;
        }
        else if (vit->type() == Vb::vtInternalNearBoundary)
        {
            if (vit->referred())
            {
                nReferred++;
                nInternalNearBoundaryRef++;
            }
 
            nInternalNearBoundary++;
        }
        else if (vit->type() == Vb::vtInternalSurface)
        {
            if (vit->referred())
            {
                nReferred++;
                nInternalSurfaceRef++;
            }
 
            nInternalSurface++;
        }
        else if (vit->type() == Vb::vtInternalFeatureEdge)
        {
            if (vit->referred())
            {
                nReferred++;
                nInternalFeatureEdgeRef++;
            }
 
            nInternalFeatureEdge++;
        }
        else if (vit->type() == Vb::vtInternalFeaturePoint)
        {
            if (vit->referred())
            {
                nReferred++;
                nInternalFeaturePointRef++;
            }
 
            nInternalFeaturePoint++;
        }
        else if (vit->type() == Vb::vtExternalSurface)
        {
            if (vit->referred())
            {
                nReferred++;
                nExternalSurfaceRef++;
            }
 
            nExternalSurface++;
        }
        else if (vit->type() == Vb::vtExternalFeatureEdge)
        {
            if (vit->referred())
            {
                nReferred++;
                nExternalFeatureEdgeRef++;
            }
 
            nExternalFeatureEdge++;
        }
        else if (vit->type() == Vb::vtExternalFeaturePoint)
        {
            if (vit->referred())
            {
                nReferred++;
                nExternalFeaturePointRef++;
            }
 
            nExternalFeaturePoint++;
        }
        else if (vit->type() == Vb::vtFar)
        {
            nFar++;
        }
    }
 
    label nTotalVertices =
          nUnassigned
        + nInternal
        + nInternalNearBoundary
        + nInternalSurface
        + nInternalFeatureEdge
        + nInternalFeaturePoint
        + nExternalSurface
        + nExternalFeatureEdge
        + nExternalFeaturePoint
        + nFar;
 
    if (nTotalVertices != label(Triangulation::number_of_vertices()))
    {
        WarningInFunction
            << nTotalVertices << " does not equal "
            << Triangulation::number_of_vertices()
            << endl;
    }
 
    PrintTable<word, label> vertexTable("Vertex Type Information");
 
    vertexTable.add("Total", nTotalVertices);
    vertexTable.add("Unassigned", nUnassigned);
    vertexTable.add("nInternal", nInternal);
    vertexTable.add("nInternalNearBoundary", nInternalNearBoundary);
    vertexTable.add("nInternalSurface", nInternalSurface);
    vertexTable.add("nInternalFeatureEdge", nInternalFeatureEdge);
    vertexTable.add("nInternalFeaturePoint", nInternalFeaturePoint);
    vertexTable.add("nExternalSurface", nExternalSurface);
    vertexTable.add("nExternalFeatureEdge", nExternalFeatureEdge);
    vertexTable.add("nExternalFeaturePoint", nExternalFeaturePoint);
    vertexTable.add("nFar", nFar);
    vertexTable.add("nReferred", nReferred);
 
    os  << endl;
    vertexTable.print(os);
}
 
 
template<class Triangulation>
Foam::autoPtr<Foam::polyMesh>
Foam::DelaunayMesh<Triangulation>::createMesh
(
    const fileName& name,
    labelTolabelPairHashTable& vertexMap,
    labelList& cellMap,
    const bool writeDelaunayData
) const
{
    pointField points(Triangulation::number_of_vertices());
    faceList faces(Triangulation::number_of_finite_facets());
    labelList owner(Triangulation::number_of_finite_facets());
    labelList neighbour(Triangulation::number_of_finite_facets());
 
    wordList patchNames(1, "foamyHexMesh_defaultPatch");
    wordList patchTypes(1, wallPolyPatch::typeName);
 
    PtrList<dictionary> patchDicts(1);
    patchDicts.set(0, new dictionary());
 
    List<DynamicList<face> > patchFaces(1, DynamicList<face>());
    List<DynamicList<label> > patchOwners(1, DynamicList<label>());
 
    vertexMap.resize(vertexCount());
    cellMap.setSize(Triangulation::number_of_finite_cells(), -1);
 
    // Calculate pts and a map of point index to location in pts.
    label vertI = 0;
 
//    labelIOField indices
//    (
//        IOobject
//        (
//            "indices",
//            time().timeName(),
//            name,
//            time(),
//            IOobject::NO_READ,
//            IOobject::AUTO_WRITE
//        ),
//        Triangulation::number_of_vertices()
//    );
 
    labelIOField types
    (
        IOobject
        (
            "types",
            time().timeName(),
            name,
            time(),
            IOobject::NO_READ,
            IOobject::AUTO_WRITE
        ),
        Triangulation::number_of_vertices()
    );
 
    labelIOField processorIndices
    (
        IOobject
        (
            "processorIndices",
            time().timeName(),
            name,
            time(),
            IOobject::NO_READ,
            IOobject::AUTO_WRITE
        ),
        Triangulation::number_of_vertices()
    );
 
    for
    (
        Finite_vertices_iterator vit = Triangulation::finite_vertices_begin();
        vit != Triangulation::finite_vertices_end();
        ++vit
    )
    {
        if (!vit->farPoint())
        {
            vertexMap(labelPair(vit->index(), vit->procIndex())) = vertI;
            points[vertI] = topoint(vit->point());
//            indices[vertI] = vit->index();
            types[vertI] = static_cast<label>(vit->type());
            processorIndices[vertI] = vit->procIndex();
            vertI++;
        }
    }
 
    points.setSize(vertI);
//    indices.setSize(vertI);
    types.setSize(vertI);
    processorIndices.setSize(vertI);
 
 
    // Index the cells
    label cellI = 0;
 
    for
    (
        Finite_cells_iterator cit = Triangulation::finite_cells_begin();
        cit != Triangulation::finite_cells_end();
        ++cit
    )
    {
        if
        (
            !cit->hasFarPoint()
         && !Triangulation::is_infinite(cit)
         && cit->real()
        )
        {
            cellMap[cit->cellIndex()] = cellI++;
        }
    }
 
    label faceI = 0;
    labelList verticesOnTriFace(3, label(-1));
    face newFace(verticesOnTriFace);
 
    for
    (
        Finite_facets_iterator fit = Triangulation::finite_facets_begin();
        fit != Triangulation::finite_facets_end();
        ++fit
    )
    {
        const Cell_handle c1(fit->first);
        const label oppositeVertex = fit->second;
        const Cell_handle c2(c1->neighbor(oppositeVertex));
 
        // Do not output if face has neither opposite vertex as an internal
//        if
//        (
//            !c1->vertex(oppositeVertex)->internalPoint()
//         || !Triangulation::mirror_vertex(c1, oppositeVertex)->internalPoint()
//        )
//        {
//            continue;
//        }
 
        label c1I = Cb::ctFar;
        bool c1Real = false;
        if
        (
            !Triangulation::is_infinite(c1)
         && !c1->hasFarPoint()
         && c1->real()
        )
        {
            c1I = cellMap[c1->cellIndex()];
            c1Real = true;
        }
 
        label c2I = Cb::ctFar;
        bool c2Real = false;
        if
        (
            !Triangulation::is_infinite(c2)
         && !c2->hasFarPoint()
         && c2->real()
        )
        {
            c2I = cellMap[c2->cellIndex()];
            c2Real = true;
        }
 
        if (!c1Real && !c2Real)
        {
            // Both tets are outside, skip
            continue;
        }
 
        label ownerCell = -1;
        label neighbourCell = -1;
 
        for (label i = 0; i < 3; i++)
        {
            verticesOnTriFace[i] = vertexMap
            [
                labelPair
                (
                    c1->vertex
                    (
                        Triangulation::vertex_triple_index(oppositeVertex, i)
                    )->index(),
                    c1->vertex
                    (
                        Triangulation::vertex_triple_index(oppositeVertex, i)
                    )->procIndex()
                )
            ];
        }
 
        newFace = face(verticesOnTriFace);
 
        if (!c1Real || !c2Real)
        {
            // Boundary face...
            if (!c1Real)
            {
                //... with c1 outside
                ownerCell = c2I;
            }
            else
            {
                // ... with c2 outside
                ownerCell = c1I;
 
                reverse(newFace);
            }
 
            patchFaces[0].append(newFace);
            patchOwners[0].append(ownerCell);
        }
        else
        {
            // Internal face...
            if (c1I < c2I)
            {
                // ...with c1 as the ownerCell
                ownerCell = c1I;
                neighbourCell = c2I;
 
                reverse(newFace);
            }
            else
            {
                // ...with c2 as the ownerCell
                ownerCell = c2I;
                neighbourCell = c1I;
            }
 
            faces[faceI] = newFace;
            owner[faceI] = ownerCell;
            neighbour[faceI] = neighbourCell;
            faceI++;
        }
    }
 
    faces.setSize(faceI);
    owner.setSize(faceI);
    neighbour.setSize(faceI);
 
    sortFaces(faces, owner, neighbour);
 
    Info<< "Creating patches" << endl;
 
    addPatches
    (
        faceI,
        faces,
        owner,
        patchDicts,
        patchFaces,
        patchOwners
    );
 
    Info<< "Creating mesh" << endl;
 
    autoPtr<polyMesh> meshPtr
    (
        new polyMesh
        (
            IOobject
            (
                name,
                time().timeName(),
                time(),
                IOobject::NO_READ,
                IOobject::NO_WRITE
            ),
            xferMove(points),
            xferMove(faces),
            xferMove(owner),
            xferMove(neighbour)
        )
    );
 
    Info<< "Adding patches" << endl;
 
    List<polyPatch*> patches(patchNames.size());
 
    label nValidPatches = 0;
 
    forAll(patches, p)
    {
        patches[nValidPatches] = polyPatch::New
        (
            patchTypes[p],
            patchNames[p],
            patchDicts[p],
            nValidPatches,
            meshPtr().boundaryMesh()
        ).ptr();
 
        nValidPatches++;
    }
 
    patches.setSize(nValidPatches);
 
    meshPtr().addPatches(patches);
 
    if (writeDelaunayData)
    {
//        indices.write();
        types.write();
        processorIndices.write();
    }
 
    Info<< "Mesh created" << endl;
 
    return meshPtr;
}
 
 
// ************************************************************************* //